Conserved Protein Domain Family
PBP1_Nba-like
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cd06359: PBP1_Nba-like 
type 1 periplasmic binding component of active transport systems predicted to be involved in 2-nitrobenzoic acid degradation pathway
This group includes the type 1 periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Links
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Statistics
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PSSM-Id: 380582
Aligned: 24 rows
Threshold Bit Score: 449.397
Created: 30-Jan-2008
Updated: 2-Oct-2020
Structure
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Aligned Rows:
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putative ligandputative dimer
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to Rhodopseudomonas palustris solute binding protein of ABC transporter (RPA0985)
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
Feature 1                                                                             ###     
BAC65298   24 KVGFISTLSGpiagFGLEIRDGFNLALknsgnkiGGLPVEVVEGDDqasPDVGKQLADKMIKrdKVDFLTGIVYSNVmla 103 Pseudomonas fluore...
NP_758544  27 RIGFITTLSTpagyLGEDSRDGFQLAIdqeggklGGVPVSLLVEDDglqLARAKQIIDRMSLd-GISLYTGVIFSNVlaa 105 Pseudomonas resino...
SFH56892   24 DVGLILSLSGsgavLGTEMQKGADLALemsggklGGLDAHFVYEDDqrkPDVGKTAAERLTRseKVDFVIGPSYSNVmma 103 Paracoccus aminovo...
OWW19635   28 KIGFIGSLTGplstLSTDMKDGFNLALkhkggkfGGADTVIVYGDDqanPDTGKQVYERLAKseNVDIITGMAFTNVmla 107 Noviherbaspirillum...
OGA57236   29 RLGFMTTLSGpiatLGKEQEMGLDLALkqlggriGGIPVEVFKEDSrmqPDTAVQAATKLVElnKIDFLTGTMLSNQlla 108 Betaproteobacteria...
ARP99662   25 KIGVILPQTGvggiLAKQMQAAIELAMthldgkiGGQPTEISWGDSqakVDVAKQLTDEMVKskKVNFVVGPLFSSEmma 104 bacterium C16-RIPI...
CCG43096   38 VIGVIATLSGpgalAGQDELDGVITAVrqlggrfANQEVKVVAVDDhgsPDTALQVTQRLLEheKVDFVMTAVSQASmaa 117 Phaeospirillum mol...
ARP97819   28 RLGFLSSMSGtfgvLGTEQKRGLDIALehlgnklGGRPIKLIEVDDkssPVEAADAANKLVEreKIQVVTGLVVSNSmla 107 bacterium C16-RIPI...
OYU46896   59 KIGLITSLSGqsayIGTDIRDGFLLAMaresrllGREIADIIIRDDgmlPDKGLEQFRDLQKteNIRLFAGFVSTDIavl 138 Rhizobiales bacter...
OJX31564   26 KIGVVTTLTGggavIGRDVVDAVNLGVehiggsmGGRKVEIVYEDDglkPELGRQKTQKLIQqdGVDVLGGYIWSNVlla 105 Burkholderiales ba...

Feature 1                     ###                # #                         # #              
BAC65298  104 vgppafaSKTFYISAAAGPAalagercnkyFFGLSWQNDGQSEAVGSYLNsknykKVFILAPNYtGGKENLEGFKRFFkG 183 Pseudomonas fluore...
NP_758544 106 vv-ntatKDGFYISNNTGPSslagkqckphYFVASYQNDTIHEMAGVAANdlgykKMVILAPNYqGGRDALEGFKRTFkG 184 Pseudomonas resino...
SFH56892  104 vqapivrSGTPLISPNPAPAelagrgcnenYFVIPFQNDQPSEALGLYLNekgvkRVFLLAPNYqAGKDVIDGFKRSFkG 183 Paracoccus aminovo...
OWW19635  108 vapaafkDKIFFVNSNAGPKelagascnyyYFNPTWHTSALSEAAGRFANqkgykRMFVVAPNYqAGREHVDGFDKEYtG 187 Noviherbaspirillum...
OGA57236  109 ivkpvtdSGAIILSGIGGPSelagarcnpnVFVLSWENNTPSEAAGKLMTdtgrkRGFFVAQNYvTGKEHVAGAKQYFkG 188 Betaproteobacteria...
ARP99662  105 vyapvarTDTFVISPIAGPApiagqgcvanFFNVSSQNDQQAEAMGAYLQklgvkKAYLMTTNNqAGKDMISGFKRFYkN 184 bacterium C16-RIPI...
CCG43096  118 iiktlldSRVFILNLDATPLdlagsgcnpsLFDLSTPPDALHEALGAVLSaekmrRLVVVAPDIpQTDLALAALRRTWtG 197 Phaeospirillum mol...
ARP97819  108 aidpllkNNVFVIGANAGPSqlagekcnqnLFVVAFANEQWGTGLADYLNrtgvkRMMFLGMDYqAGWDHAKSVAKNFkG 187 bacterium C16-RIPI...
OYU46896  139 avpemvkSGALYVSPNAAPNalsgkachpnYFVMSFQNDSMVEIAAGFASqkgysRAYILSASYqAGQEAASGFRQHFkG 218 Rhizobiales bacter...
OJX31564  106 srkpivdAGKVVVSVNAGPSdiagklcyenFIAMHAQNDVLPMAVGKLMNlrgakKLYFMAPNYtAGKDFLQAVRRVYtG 185 Burkholderiales ba...

Feature 1                                        #                                            
BAC65298  184 EVSSEVYVKLGQl---dFASELAQIRSTkpdAVFFFLPSgmSINFIKQYVGAgldkdIPYFSTGhsaded---vvtavGE 257 Pseudomonas fluore...
NP_758544 185 EVTEIYTKLNQLd----FSVELARVRSLapdAIFQFHPGgaGINFAKQYGSSglnksIPMVVPVfsmder---mlaatGD 257 Pseudomonas resino...
SFH56892  184 EIVSEIYTSLEQn---dFSAEITEIRARapeAVLAFMPGglGVQFVKQYDQAglkpnSALYTVFtvfngv---sldaiGP 257 Paracoccus aminovo...
OWW19635  188 EIAGRAYNKIGQl---dFSVEIGQIRAAnpdAVFFALWGpmAINFVKQFNQAglnkkIDLVTAGfavdad---ilpalGD 261 Noviherbaspirillum...
OGA57236  189 QVVGEAYPDRTTm---dFAAEISQIRAAnpdSAYVFMPGaqGIAFVKQYAAAgltkdIPLYSGSwladeh---syaalGD 262 Betaproteobacteria...
ARP99662  185 EVVGEVYTRFGQv---dFAAELSELRNAqpdATFIFYPGdmGVQFVKQYAQAgimksSPLYTVWtvdqa----slpaiGN 257 bacterium C16-RIPI...
CCG43096  198 EVMTVLRPRHGAa---tFAAELDTVRRLspdAVYSLLTGgmGLSFVRDYAAAglkteIPLIGNSngferp---llaamDD 271 Phaeospirillum mol...
ARP97819  188 ENLGEIYTPLTQm---dFSSVLTQVRAAkpdAIYAFYVGgaAVPFMKQWKQSglsktVKLYSMGaiadsm---llpamGD 261 bacterium C16-RIPI...
OYU46896  219 TVVGQSSVSFGQt---dFSAELKKIHEAkpdVVLQFLPGslGLNFLRSFQEArmsdkIAIVLPAsaldhr---mtaiaGS 292 Rhizobiales bacter...
OJX31564  186 EVVGADMTRWGDdpqldFSAELSKVRASgadALFAFYPGaaGAAFARQFDQSglagkTKLFTAFtldqlnlpslqaagVK 265 Burkholderiales ba...

Feature 1                                          #                                          
BAC65298  258 QMVGLKNAAHWAwdLKNPQNEAFVADFKKTYgriPTMYAFQGYDVVRLLDSAVkdvkgnlsdkealhtALMTTDFKSLRG 337 Pseudomonas fluore...
NP_758544 258 VAKGMNIVTLWNpgSTNPANQAFVKAFNDKYkrvPTVYAAQTYDTARLIGAALktvdgnlkdpealrsALRNVTFDSIRG 337 Pseudomonas resino...
SFH56892  258 AAEGVYSVDQWTydLDNDANRAFVEAYRTKYgtlPSNFAAMAYDSVRLIDGAIakaggig-dmdavraAMRKASFHSVRG 336 Paracoccus aminovo...
OWW19635  262 AAVGIYNTSQWSpdFTNPVNKKFVEDFEKEYkrpASIYASQGYEVGLLLDAAIrdskgkhkdnkvlhdALMAAKYDSVRG 341 Noviherbaspirillum...
OGA57236  263 LSLGTNLAANWFvgLDNPRNKEFVAAFRKEYgrnPVFYAAFVYDSIMLLDSAVravngnirnkdalraAMRKADFRSTRG 342 Betaproteobacteria...
ARP99662  258 EAIGVKSANVWSidLPNKVNVRFVKDFASKNgflPNDYAAHAYDSIMLIDSAVkgvkgdlsrkddlrkALTLAQFESNRG 337 bacterium C16-RIPI...
CCG43096  272 AALDILTVSSWSpdLDVPVNRRLIADFEAEYarpVTSWVAQGYDAALLIDSAMratngrtgdrdavrnALRRADFSSVRG 351 Phaeospirillum mol...
ARP97819  262 AALGLETAYSWNpeMKTPGNQRFVEDFRKKHgrnPTQFAMFQYDAIMLLDAAVkeagped--adkfrvALKKANFQSLRG 339 bacterium C16-RIPI...
OYU46896  293 SAAGVFVTSHWNvdFANEANRAFVSEWQAKYnrpPTLYAMQGYDTGLAMAAAVvgaggatddpqaiarELRKADFRSPRG 372 Rhizobiales bacter...
OJX31564  266 GVLGSETADFWAadLDNAENKRFVKEFNAKYgrlPSNYAATSYDMVTQLKAAVdelggntkeaaklsaALRKAAYRSVRG 345 Burkholderiales ba...

Feature 1                         
BAC65298  338 NFKFNTn-QFPMDSFYLREV 356 Pseudomonas fluorescens
NP_758544 338 DFAFGKn-QHAVIDWYLLRV 356 Pseudomonas resinovorans
SFH56892  337 DFAFNNn-QHPIHSMYLAKV 355 Paracoccus aminovorans
OWW19635  342 YFKFASn-QNPTQHVYLRQV 360 Noviherbaspirillum denitrificans
OGA57236  343 KFRFNTn-QFPIQDFYVAKV 361 Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14
ARP99662  338 KFAYNSn-NFPIQDYYVREV 356 bacterium C16-RIPI 110
CCG43096  352 AFRFDPn-QMPSLTIYQRRV 370 Phaeospirillum molischianum DSM 120
ARP97819  340 NFKFNNn-NFPIQDIILQRV 358 bacterium C16-RIPI 110
OYU46896  373 PFRFGRn-QHPVQDWWLLSV 391 Rhizobiales bacterium PAR1
OJX31564  346 VQYRIGknGFPVDRFVAVEV 365 Burkholderiales bacterium 68-12

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