3RGF


Conserved Protein Domain Family
STKc_CDK8_like

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cd07842: STKc_CDK8_like 
Click on image for an interactive view with Cn3D
Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases
STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.
Statistics
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PSSM-Id: 270834
Aligned: 19 rows
Threshold Bit Score: 469.844
Created: 31-Jul-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 18 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                ####    #                                                               
3RGF_A        21 LFEYEGckVGRGTYGHVYKAKRKdg------------------------------------------------------- 45  human
XP_647600     43 KYTFSYe-IGSGTYGMVYKADDKkr------------------------------------------------------- 66  Dictyostelium d...
EAU82605      43 KYAILGf-ISSGTYGRVYKAQSIn-------------------------------------------------------- 65  Coprinopsis cin...
AAW46899      31 TYKILGf-ISSGTYGRVYKAVLLpppktasaksalpsstraalslpkdklp--------------------------sps 83  Cryptococcus ne...
O13958         4 GYKIIGf-ISSGTYGKVYKAVSSns------------------------------------------------------- 27  fission yeast
NP_015283     74 KYEVIGy-IAAGTYGKVYKAKRQinsgtnsangsslngtnakipqfdstqpkssssmdmqantnalrrnllkdegvtpgr 152 baker's yeast
Q6BM25        58 KYQIIGy-IAAGTYGKVYKAKSKtngnsnsnsalmndnvisig------------------------------------- 99  Debaryomyces ha...
A2QU77        39 RYHIVGf-ISSGTYGRVYKAIGKng------------------------------------------------------- 62  Aspergillus nig...
XP_001781382  18 QYDLVGk-IGEGTYGLVYLAKSKepahrlmtl------------------------------------------------ 48  Physcomitrella ...
AAO64158      24 QYNLVGk-IGEGTYGLVFLARTKtp------------------------------------------------------- 47  thale cress
Feature 1                                    # #                                             #   
3RGF_A        46 ----------------------kdDKDYALKQIEG-------------------TGISMSACREIALLRELkHPNVISLQ 84  human
XP_647600     67 -----------------------pNNKVAVKKFRStk---------------egEGLSLTAYREIGLLKELsNENIVKLL 108 Dictyostelium d...
EAU82605      66 -----------------------gGELLAIKKFKPdkegd----------vvtyTGISQSAIREIALNREInHENVVALR 112 Coprinopsis cin...
AAW46899      84 ftedsdplnnpemcmrpgdrpakrGDVFAIKKFKPdkegd----------vltyAGISQSGAREIMLNRELhHRNLVSLR 153 Cryptococcus ne...
O13958        28 ----------------------ndKRLFAIKKFKAeskqvs--------snaqqTGVSQSAIREMMLCREIqHENIVSLV 77  fission yeast
NP_015283    153 irttredvsphynsqkqtlikkplTVFYAIKKFKTekdgv---------eqlhyTGISQSACREMALCRELhNKHLTTLV 223 baker's yeast
Q6BM25       100 -----ngqkeaglqktnnesmedkNQLFAIKKFKSdnhsnknnhdingnevihyTGISQSAIREMSLCRELsNKNITKVV 174 Debaryomyces ha...
A2QU77        63 -----------------------qKGEFAIKKFKPdkege----------iiqyTGLSQSAIREMALCSELdHPNVVQLA 109 Aspergillus nig...
XP_001781382  49 ----------------lslgaysrGTKIAIKKFKQsk---------------egDGVSPTAIREIMLLRECiHENIVKLV 97  Physcomitrella ...
AAO64158      48 -----------------------pKRPIAIKKFKQsk---------------dgDGVSPTAIREIMLLREIsHENVVKLV 89  thale cress
Feature 1                      ####  #  #                                                ## #    
3RGF_A        85 KVFLshadRKVWLLFDYAEHDLWHIIKFHRASkankkpvqLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMge 164 human
XP_647600    109 DVCLnpkdKLLYLIFDYAEFDLFGIIKYHRENgs-----hFSDATIKSLIWQVLNGIHYLHSNWVIHRDLKPSNILVMge 183 Dictyostelium d...
EAU82605     113 EVILe--dKSIYMVFEYAEHDFLQVIHHYYQTir----tsIPTAVLKSLIYQLFNGLIYLHASHILHRDLKPANILITs- 185 Coprinopsis cin...
AAW46899     154 EVILe--dKSIYMVFEYAEHDFLQIIHYHSQTar----asIPPSTLRRLLHQLLCGVHFLHSNFVLHRDLKPANILVTs- 226 Cryptococcus ne...
O13958        78 QVLLk--dGTISMVFEYAEHDLLQIIHFHSRSrt----rqIPPSILKSILWQIINGVAYLHENWIMHRDLKPANIMITa- 150 fission yeast
NP_015283    224 EIFLe--rKCVHMVYEYAEHDLLQIIHFHSHPek----rmIPPRMVRSIMWQLLDGVSYLHQNWVLHRDLKPANIMVTi- 296 baker's yeast
Q6BM25       175 DILLe--nKSIYMVFEYCEHDLLQIIQYHSHPdv----kpIPDFTIKSITWQILNGVTFLHKNWIFHRDLKPANIMVSs- 247 Debaryomyces ha...
A2QU77       110 EIILe--dKCIFMVFEYTEHDLLQIIHHHTQPqr----haIPALMVRSILFQLLNGLLYLHTNWVLHRDLKPANILVTs- 182 Aspergillus nig...
XP_001781382  98 NVHInhgdMSLYLAFDYAEHDLYEIIRHHREKin----csINAYTVKSLLWQILNGLNYLHSNWIIHRDLKPSNILVMge 173 Physcomitrella ...
AAO64158      90 NVHInfadMSLYLAFDYAEYDLYEIIRHHRDKvg----hsLNTYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMgd 165 thale cress
Feature 1                  #                                                                     
3RGF_A       165 gperGRVKIADMGFARLFNSPLKp--LADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTsEPIFHCRqed 242 human
XP_647600    184 gkecGTVKIGDFGLARIFQSPLK---PLNENGVVVTIWYRSPELLLGSKHYTRAVDIWAIGCIFAELITtKPLFPGKekd 260 Dictyostelium d...
EAU82605     186 ---qGVVKIGDLGLARLCYEPLQp--LFAGDKVVVTIWYRAPELLMGAKHYNKAIDCWAVGCVMAELASlRPIFKGEeak 260 Coprinopsis cin...
AAW46899     227 ---qGVVKIGDLGLARLWHKPLAqqgLYGGDKVVVTIWYRAPELILGAKHYTAAVDIWAVGCIYAELLSlRPIFKGDeak 303 Cryptococcus ne...
O13958       151 ---tGKVKIGDLGLGRLIRDPILp--FYSSDRVVVTIWYRAPELLLGAHDYTPAIDVWAIGCIYGEMLAlSPLFKGDeik 225 fission yeast
NP_015283    297 ---dGCVKIGDLGLARKFHNMLQt--LYTGDKVVVTIWYRAPELLLGARHYTPAVDLWSVGCIFAELIGlQPIFKGEeak 371 baker's yeast
Q6BM25       248 ---sGVVKIGDLGLARKFNNPLQs--LYTGDKVVVTIWYRAPELLLGARHYTPSIDLWAVGCILAELLSlRPIFKGEeak 322 Debaryomyces ha...
A2QU77       183 ---sGAIRIGDLGLARLFYKPLNs--LFSGDKVVVTIWYRAPELLMGSRHYTPAVDLWAVGCIFAELLSlRPIFKGEeak 257 Aspergillus nig...
XP_001781382 174 gdeqGLVKIGDFGLARIFQAPLR---SLSENGVVVTIWYRAPELLLGSRHYTSAVDMWAVGCIFAELLTlKPLFQGIedk 250 Physcomitrella ...
AAO64158     166 aeehGIVKIADFGLARIYQAPLK---PLSDNGVVVTIWYRAPELLLGSKHYTSAVDMWAVGCIFAELLTlKPLFQGAeak 242 thale cress
Feature 1                                                                                        
3RGF_A       243 i----ktsnPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHStlmk---dfrRNTYTNCSl-IKYMEKhkv---------- 304 human
XP_647600    261 p----kipsLFQDDQVEKIIRVLGKPTLDMWPDIKHLPEWKrl------ssMEAFPNSL--AKCVGId------------ 316 Dictyostelium d...
EAU82605     261 ld--skknvPFQRDQLIKIFEVLGTPDERDWPGVVDMPEYRnm------klLDHFSNRL--SDWCHTri----------- 319 Coprinopsis cin...
AAW46899     304 md--gkkslPFQRDQMGKICEVLGPVKPEQWPGIVHMPEYRty------qaTGPYPHSNplAPWYHArs----------- 364 Cryptococcus ne...
O13958       226 me--dkkvvPFQSTQMLRIMELLGTPTEERWPGLKNYPEYYqls-----sfEVRYWNNLl-PQWYQTvk----------- 286 fission yeast
NP_015283    372 ld--skktvPFQVNQLQRILEVLGTPDQKIWPYLEKYPEYDqi------tkFPKYRDNL--ATWYHSag----------- 430 baker's yeast
Q6BM25       323 idmnnkksvPFQKNQLQKIVEVLGTPTTKNWPTITKYPEYSafq----qhfSNTYPPNL--ISWYKLig----------- 385 Debaryomyces ha...
A2QU77       258 md--skktvPFQRNQMMKIIEIMGLPTKEIWPGIVSMPEYSqlqslamsraPGHFNRSSnlEGWYQSclknngysanssa 335 Aspergillus nig...
XP_001781382 251 s-----spnPFQLDQLDKIFKVLGNPTADKWPTLLTLPHWAsnrq---niqTRKYDNPGl-YSIVQLp------------ 309 Physcomitrella ...
AAO64158     243 s-----sqnPFQLDQLDKIFKILGHPTMDKWPTLVNLPHWQndvq---hiqAHKYDSVGl-HNVVHLn------------ 301 thale cress
Feature 1                                          
3RGF_A       305 -kpDSKAFHLLQKLLTMDPIKRITSEQAMQDPYF 337 human
XP_647600    317 --eNSQAYDLLSKMILYDPSKRITASEALDHPYF 348 Dictyostelium discoideum AX4
EAU82605     320 --rSPQGYDLLRQLFAYDPDNRLTAEQAIQHKWF 351 Coprinopsis cinerea okayama7#130
AAW46899     365 --nSSEGYDILVKMFEWDPARRITARDALRHPWF 396 Cryptococcus neoformans var. neoformans JEC21
O13958       287 -nrDPQGLDLLMKMLQYDPKSRITAKQALEHVFF 319 fission yeast
NP_015283    431 -grDKHALSLLYHLLNYDPIKRIDAFNALEHKYF 463 baker's yeast
Q6BM25       386 -rtSKQCLNLLRCLLEYDPTIRITADDALTHAFF 418 Debaryomyces hansenii
A2QU77       336 gtpGADGFDLLSRLLEYDPTKRITAQEALEHPYF 369 Aspergillus niger CBS 513.88
XP_001781382 310 --pKSPGFDLLSKMLEYDPIKRITASQALEHDYF 341 Physcomitrella patens subsp. patens
AAO64158     302 --qKSPAYDLLSKMLEYDPLKRITASQALEHEYF 333 thale cress

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