1NGV,1R4M


Conserved Protein Domain Family
Uba3_RUB

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cd01488: Uba3_RUB 
Click on image for an interactive view with Cn3D
Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Statistics
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PSSM-Id: 238765
Aligned: 14 rows
Threshold Bit Score: 489.174
Created: 10-Jan-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site include 1 residue -Click on image for an interactive view with Cn3D
Feature 1:catalytic residue [active site]
Evidence:
  • Comment:forms thioester bond with ubiquitin (-like) molecule

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                     
1NGV_B     50 KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRvp--nCNVVPHFNKI 127 human
1R4M_B     39 KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRvp--nCNVVPHFNKI 116 Homo sapiens
NP_912949  48 EVLVVGAGGLGCELLKDLALSGFKNIHVIDMDTIDVSNLNRQFLFRVQDVGKSKAEVAAKRVMERvs--gVNIVPHFCRI 125 Japanese rice
O65041     48 RILVIGAGGLGCELLKDLALSGFRNLEVIDMDRIEVTNLNRQFLFRIEDVGKPKAEVAAKRVMERvs--gVEIVPHFSRI 125 thale cress
Q09765     46 KILIIGAGGLGCEILKDLALSGFRDLSVIDMDTIDITNLNRQFLFNESNIDEPKANVAASMIMKRip--sTVVTPFYGKI 123 fission yeast
XP_331731  45 KIKIFGAGGLGCEILKNLALSGFKDISVIDMDTIDISNLNRQFLFRHADVGKFKAEVAAKFVERRvk--gVKITPYNCKI 122 Neurospora crassa
EAK92026   42 KILIIGAGGLGCEILKNLAMVGFKNLYIIDMDTIELSNLNRQFLFRMKDIGKSKAEIAAQFVRDRiddpsLNIKSYFNKI 121 Candida albicans S...
AAB41850   38 HVLVIGAGGLGCEILKNLALSGFRNIDVIDMDTIDISNLNRQFLFRQSDVGNSKAIAAANFINKRvp--gAKVTPHYKKI 115 slime mold
NP_610913  50 QVLIIGAGGLGCELLKDLALMGFGNLHVIDMDTIELSNLNRQFLFRRTDIGASKAECAARFINARvp--tCRVTPHFKKI 127 fruit fly
AAA81160   44 KILVIGAGGLGCELLKNLALSGFRTIEVIDMDTIDVSNLNRQFLFRESDVGKSKAEVAAAFVQQRvv--gCQVTAHNCRI 121 nematode
Feature 1                                                                                     
1NGV_B    128 QDFNDTFYRQFHIIVCGLDSIIARRWINGMLIsllnyedg-vldpssiVPLIDGGTEGFKGNARVILPGMTACIECTLEl 206 human
1R4M_B    117 QDFNDTFYRQFHIIVCGLDSIIARRWINGMLIsllnyedg-vldpssiVPLIDGGTEGFKGNARVILPGMTACIECTLEl 195 Homo sapiens
NP_912949 126 EDKEIEFYSQFSIIVLGLDSIEARSYINSVACgfleydsddkpipetlKPMVDGGTEGFKGHARVIIPGTTPCFECNIWl 205 Japanese rice
O65041    126 EDKEIEFYNDFNIIALGLDSIEARKYINGVACgfleyneddtpkretiKPMVDGGTEGFKGHAKVILPGVTPCFECTIYl 205 thale cress
Q09765    124 QDKTIEFYKEFKLIICGLDSVEARRWINSTLVaiak--------tgdlIPLVDGGSEGLKGQARVIIPTITSCYECSLDm 195 fission yeast
XP_331731 123 QDFDEDFYQQFQIVVCGLDSIEARRWINATLVnmasce-----npdsmKPLIDGGTEGFKGQARVILPTMGSCIECQLDm 197 Neurospora crassa
EAK92026  122 QDKPIEFYQQFNLVISGLDSIEARRWINATLIslvp--------qgymIPLIDGGTEGFRGQSRVIIPTVTSCFECSLDl 193 Candida albicans S...
AAB41850  116 QDFDEDFYRGFNLVIAGLDSIEARRWINGLLVnmvvttad-gidpdtiIPMIDGGTEGFKGQARVILPRLTSCFECSLEa 194 slime mold
NP_610913 128 QDFDESFYQQFHLVVCGLDSIVARRWINGMLLsmlryeedgtidtssiVPMIDGGTEGFKGNARVILPGFTACIECTLDl 207 fruit fly
AAA81160  122 EDKGQEFYRKFSIIICGLDSIPARRWINGMLCdlvlemadgkpdentiIPMIDGGTEGFKGNARVIYPKFTACIDCTLDl 201 nematode
Feature 1              #                                                                      
1NGV_B    207 yPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPkeqpfge----------------gvpldgDDPEHIQWIFQKSLERASQ 270 human
1R4M_B    196 yPPQVNFPMATIASMPRLPEHCIEYVRMLQWPkeqpfge----------------gvpldgDDPEHIQWIFQKSLERASQ 259 Homo sapiens
NP_912949 206 fPPQVKFPLCTLAETPRTAAHCIEYAHLIKWNevhpg-------------------kpfdaDDAEHMQWIYSEALKRAEL 266 Japanese rice
O65041    206 fPPQVKFPLCTLAETPRNAAHCIEYAHLIQWEtvhrg-------------------ktfdpDEPEHMKWVYDEAIRRAEL 266 thale cress
Q09765    196 lTPKISYPICTLANTPRLPEHCVEWAYLLEWPrvflnasvdsfskqevfepldgknsnfepDNIRHIDWLVKRSIERANK 275 fission yeast
XP_331731 198 hAPRAAVPLCTLASIPRQPEHCIEWAHVIAWDkekpf-------------------pqldkDDPEHITWLYQKALERAKE 258 Neurospora crassa
EAK92026  194 lSTKVTYPVCTIANTPRLPEHCIEWATQIEWNdkflg-------------------kkldgDNPEHIEWVYQTALERANE 254 Candida albicans S...
AAB41850  195 fPPQVTFPLCTIAHTPRLPEHCIQWASLIAWNdkelhgfp--------------lgtkidtDSPDHMTWLYETAKKRAEQ 260 slime mold
NP_610913 208 fPPQVNYPLCTIANTPRLPEHCIEYVKIIQWEkqnpfg------------------vpldgDDPQHIGWIYERALERSNE 269 fruit fly
AAA81160  202 yPPQVNFPLCTIAHTPRLPEHCIEYIKVVVWPeekpfe-----------------gvsldaDDPIHVEWVLERASLRAEK 264 nematode
Feature 1                                                                                     
1NGV_B    271 YNIRGVTY--RLTQGVVKRIIPAVASTNAVIAAVCATEVFKIAtsay-------iplnNYLVFNdvdgLYTYTFEAERKE 341 human
1R4M_B    260 YNIRGVTY--RLTQGVVKRIIPAVASTNAVIAAVCATEVFKIAtsay-------iplnNYLVFNdvdgLYTYTFEAERKE 330 Homo sapiens
NP_912949 267 FGISGVTY--SFTQGVVKNIIPAIASTNAIVSAACALEALKLIsgcs-------ktvsNYLTYNgldgTHINVSEFAREK 337 Japanese rice
O65041    267 FGIPGVTY--SLTQGVVKNIIPAIASTNAIISAACALETLKIVsacs-------ktlvNYLTYNggegLYTEVTKFERDT 337 thale cress
Q09765    276 FQIPSSSInrFFVQGIVKRIIPAVASTNAIIAASCCNEALKILtesn-------pfldNYMMYVgedgAYTYTFNLEKRS 348 fission yeast
XP_331731 259 FNISGVTY--SLTQGVVKNIIPAIAATNSVIAAACCNEALKIAsscapflgtpgegepNYMMYSgndsIYTYTFKHEQKE 336 Neurospora crassa
EAK92026  255 FNIGGVTK--HLTLGVVKNIIPAIASTNAIIAASCCNEAFKLItdsn-------pilnNYMMYTgddsIHTYTFEHSKKL 325 Candida albicans S...
AAB41850  261 HKIQGVTY--KLTQGVVKNIIPAIASTNAIIAAACCNEAFKICtnss-------gnlnNYMMYNgvngVYTYTFEYEQKE 331 slime mold
NP_610913 270 FNITGVTY--RLVQGVVKHIIPAVASTNAAIAAACALEVFKLAtscy-------dsmaNYLNFNdldgIYTYTYEAEKSE 340 fruit fly
AAA81160  265 YNIRGVDR--RLTSGVLKRIIPAVASTNAVIAASCALEALKLAtnia-------kpidNYLNFTqihgAYTSVVSMMKDD 335 nematode
Feature 1           
1NGV_B    342 NCpACS 347 human
1R4M_B    331 NCpACS 336 Homo sapiens
NP_912949 338 DClVCG 343 Japanese rice
O65041    338 EClVCG 343 thale cress
Q09765    349 DCpVCG 354 fission yeast
XP_331731 337 DCpVCG 342 Neurospora crassa
EAK92026  326 NC-ICS 330 Candida albicans SC5314
AAB41850  332 HCaVCG 337 slime mold
NP_610913 341 NClACS 346 fruit fly
AAA81160  336 NClTCS 341 nematode

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