Conserved Protein Domain Family
PRK09415

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PRK09415: PRK09415 
RNA polymerase factor sigma C; Reviewed
Links
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Statistics
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PSSM-Id: 181835
Aligned: 28 rows
Threshold Bit Score: 244.657
Created: 9-Dec-2010
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
51892045    1 MSQSDRAALPSD----RTAAIDHLMREYGTKVLHLAYSYLKDRHLAEDVAQEVFIKAYRNWENFRGESSAYTWLYRITVN 76 
16802467    4 LEEIGIHINSIEn---TEQIISQLMDNYSDDVLHLVFSYVKNRTTAEDLTQEIFIKCYEKLDQFNNKSSIKTWLYRIAIN 80 
284800709   4 LEEIGIHINSIEn---TEQIISQLMDNYSDDVLHLVFSYVKNRTTAEDLTQEIFIKCYEKLDQFNNKSSIKTWLYRIAIN 80 
284993895   4 LEEIGIHINSIEn---TEQIISQLMDNYSDDVLHLVFSYVKNRTTAEDLTQEIFIKCYEKLDQFNNKSSIKTWLYRIAIN 80 
229604778   1 MDELTVEAFEIEd---KEDLIDEIMNKYGQEVLQLVYSYVNNKEVAEDVTQDIFVKCYKSLHTYKGNSNLKTWLWRIAIN 77 
47777889    1 MDELTVEAFEIEd---KEDLIDEIMNKYGQEVLQLVYSYVNNKEVAEDVTQDIFVKCYKSLHTYKGNSNLKTWLWRIAIN 77 
15615924    1 MESLPGKIGEIEtaemREHQLIAWMEEYGTAILRVVYSYVKDKQIAEDLTQEVFVRAFQSYHTYQTRSSAKAWLYRIAIN 80 
288555447   8 TEEKEMD---------KEALLTELMNEYGNGVLKLIFSYVHQQDIAEDLAQEVFVKVYQKIDQFEQRASLKTWLYRIAIN 78 
294500199   1 MKELTVEWIQVQd---KELVIDEIMDRYGQEILQLAYSYVNSVAVAEDLTQEIFIKCYKNLYRYSGKSKFRTWLWQIAIN 77 
16799520    4 LEEIGININSIEn---TEQIISQLMDNYSDDVLHLVFSYVKNRTTAEDLTQEIFIKCYEKLDQFNNKSSIKTWLYRIAIN 80 
51892045   77 LCRDKARSAWWRRLLPTDDpRAAGTPVEPDTAgddpEEAVVLSDQRERLLDYVMQLSDAYREVIILYYYHDLTTVEIAEV 156
16802467   81 HCKDYLGSWHYRKLNFNDK-IWDYLPSKSKHV----EEEVIAKDVANSLMSAVMDLPVKYREVVFLHYYEELPLANISKI 155
284800709  81 HCKDYLGSWHYRKLNFNDK-IWDYLPSKSKHV----EEEVIAKDVANSLMSAVMDLPVKYREVVFLHYYEELPLANISKI 155
284993895  81 HCKDYLGSWHYRKLNFNDK-IWDYLPSKSKHV----EEEVIAKDVANSLMSAVMDLPVKYREVVFLHYYEELPLANISKI 155
229604778  78 HCKDYLKSWYNKKVIVTED-DFTYMESQKESV----EQIVIQNAEDSRLASAVMSLPIKYREVIYLFYYEELSIKEIATV 152
47777889   78 HCKDYLKSWYNKKVIVTED-DFTYMESQKESV----EQIVIQNAEDSRLASAVMSLPIKYREVIYLFYYEELSIKEIATV 152
15615924   81 RSKDFLKSWHAKHVYPSE--VAEEIETTEQTP----EYEVLLKSDEERLAAAVFSLPLSYREVIYFYYYEELSVKEVASF 154
288555447  79 SSKDYLKSWHTKNVQTSEEgNMIEHMVDLRTP----ESNLIERTEEEELVTKVLSLPLMYKEVIYLYYYEEYSIQEISEL 154
294500199  78 HCKDFLKSWYNKNIIPATD-YFPNHISEKESI----EEAVIQHEEDHELMSAVMKLPTKYKEVIYLFYYEELLIKDIALV 152
16799520   81 HCKDYLGSWHYRKLNFSEK-IWNYLPSKSKHV----EEEIIAKDVANSLMSAVMDLPVKYREVVFLHYYEELSLANISKI 155
51892045  157 TGQNENTVKTRLFRARAMLKQMLQKGG 183
16802467  156 TGVNSNTLKTRLKQARELLKNKMKKEV 182
284800709 156 TGVNSNTLKTRLKQARELLKNKMKKEV 182
284993895 156 TGVNSNTLKTRLKQARELLKNKMKKEV 182
229604778 153 IEVKENTIKTRLKKAKELLKKGLEE-- 177
47777889  153 IEVKENTIKTRLKKAKELLKKGLEE-- 177
15615924  155 TGLNENTVKTRLRKGRLLLKNLLEKED 181
288555447 155 LQINKNTVKTRLFQARKKLKQSFVGGV 181
294500199 153 TKTGTNTVKTRLRRAKSLLKEMLEE-- 177
16799520  156 TGVNSNTLKTRLKHARELLKTKMKKEV 182
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