Conserved Protein Domain Family
bHLH_TS_NGN

?
cd11428: bHLH_TS_NGN 
basic helix-loop-helix (bHLH) domain found in neurogenin (NGN) family
The NGN family includes three neural-specific bHLH transcription factors, NGN1-3, which may function at neuroblast selection genes during the development of several neuronal lineages. NGN-1, also termed Class A basic helix-loop-helix protein 6 (bHLHa6), or neurogenic basic-helix-loop-helix protein, or neurogenic differentiation factor 3 (NeuroD3), is a neural-specific bHLH transcription factor involved in the initiation of neuronal differentiation. NGN-2, also termed Class A basic helix-loop-helix protein 8 (bHLHa8), or protein atonal homolog 4 (ATOH4), is a neural-specific bHLH transcription factor required for sensory neurogenesis. NGN-3, also termed Class A basic helix-loop-helix protein 7 (bHLHa7), or protein atonal homolog 5 (ATOH5), is a neural-specific bHLH transcription factor expressed in the developing central nervous system and the embryonic pancreas. It is involved in neurogenesis and plays an important role in spermatogenesis.
Statistics
?
PSSM-Id: 381434
Aligned: 15 rows
Threshold Bit Score: 105.6
Created: 15-Jun-2011
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
 
putative DNAputative dimer
Feature 1:putative DNA binding site [nucleic acid binding site]
Evidence:
  • Comment:The N-terminal basic region of bHLH mediates high-affinity DNA-binding to specific hexanucleotide sequences
  • Comment:Based on the structure evidence that Mus musculus myoD (1MDY) basic region binds DNA.
  • Citation:PMID 8181063

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1         #   # ### #    #                 ####                   
Q92886        93 RRVKANDRERNRMHNLNAALDALRSVLPsfPDDTKLTKIETLRFAYNYIWALAETLR 149 human
ADK23852     176 RRMKANDRERSRMHSLNDALDCLREVLPnySDEGKLTKIETLRFAHNYIWTLSEALK 232 Octopus bimaculoides
NP_001071999 110 RRSKANDRERNRMHGLNDALEELRHVLPtyPDETKLTKIETLRFAYNYIWCLSEMLK 166 Ciona intestinalis
NP_001161600  81 RRLKANDRERNRMHTLNEALDGLRNVLPkfPDDTKLTKIETLRFAHNYIWALSQMLK 137 Saccoglossus kowalevskii
CAQ57535     103 RRVKANDRERNRMHNLNSALDQLRTVLPqnTEDAKLTKIETLRFAHNYIWTLSEMLK 159 Dumeril's clam worm
PIK42546     117 RRMKANDRERNRMHSLNEALDGLREVLPkfPDETKLTKIETLRFAHNYIWALTEMLK 173 Japanese sea cucumber
O16867       155 RRMKANDRERNRMHNLNDALEKLRVTLPslPEETKLTKIEILRFAHNYIFALEQVLE 211 fruit fly
XP_013402653  73 RRVKANDRERNRMHNLNDALESLRKILPs-PGEAKLTKIETLRFAHNYIWAMTQTIK 128 Lingula anatina
EFX83476      34 RRVKANDRERNRMHMLNHALDRLRTVLPtfPEETKLTKIETLRFAHNYIWALSQTLD 90  common water flea
OQR73175      45 HRLRANDRERSRMHHLNDALDRLRDVLPssSDESKLTKIETLRFAHNYIYALAETLA 101 Tropilaelaps mercedesae

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap