5CWS


Conserved Protein Domain Family
Nup54

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pfam13874: Nup54 
Nucleoporin complex subunit 54
This is the human Nup54 subunit of the nucleoporin complex, equivalent to Nup57 of yeast. Nup54, Nup58 and Nup62 all have similar affinities for importin-beta. It seems likely that they are the only FG-repeat nucleoporins of the central channel, and as such they would form a zone of equal affinity spanning the central channel. The diffusion of importin-beta import complexes through the central channel may be a stochastic process as the affinities are similar, whereas movement from cytoplasmic fibrils to the central channel and from the central channel to the nuclear basket would be facilitated by the subtle differences in affinity between them.
Statistics
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PSSM-Id: 464011
Aligned: 109 rows
Threshold Bit Score: 72.6139
Created: 25-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5CWS_K        50 PKEWEEAL-----QRKPa-pNFIPVLCSGFPSIVARLMLQRRVITEFNNKLHQINASLDAILSRHDLDHTVRAFNARRRH 123 Chaetomium ther...
ERN10010     122 DIMWAEAMaklegMESSdreRLWPQLVQGFKDLSQRLKLQDEALVSDVERLRTTQTNVKLLERHFQVDTLPWIQRMRQKE 201
XP_002514932 185 DIMWAEAMaklegMESSdreRLWPQLVQGFKDLSNRLKLQDEVIVSDAERLRMTQSNVKMLQRHFQAETLPRIERMRQKE 264
XP_002893457 167 DIMWAEAMsklegMDSTereRLWPQLVQGFKDLSQRLKLQDEVLASDRDRIKTTQSNVKMLQRHLQASTFPSIERLRQKE 246
EER96247     220 DIMWAEAMgklecMDSAdreRLWPQLVQGFKDLSHRLKLQDEVLVSDTDRLSMTHSNVKKLQRHFQADTYPWIQRLKQQE 299
EGC38928     239 AADWQNAL-----DNNPdpsKFIPVVAKSFNDLKQRREQQQEIIKQLDQRTQETLKSMRDLENQLNFHVHSQLEMIRKKQ 313
Q55BX5       247 VDQWAYAL-----SNNPdpsILIPVAAKSFDDLINRRMKQEETIIALDQNTQEALKRMRDLENHLNFHIHTQLEMMRKKQ 321 Dictyostelium d...
EFA85740     292 DEQWIYAQ-----SQNPdpnLFVPVAARSFNDLRERKIIQEKNIDLLFNNTMESLNNIKSLQNYLALQIQSQYEAMKKRN 366
EGG20687     270 DEQWTYIN-----SQNPdptMFVAVAARSFDDLIKRKTVQKLNIDKLHESTIDTLKHIKELQNYLNLQIQSQLETMRKKN 344
XP_002140932 127 IKELNITK-----ERNPdpnKCYTLPLKGFGELVMREQQQRNELENLLNDMKAVKEENLKLLEMLNNKTLIRIEECKKRH 201
5CWS_K       124 AELSRRCLHLAARVQVL--RNRGYALSGDEDELKQKLQ-QIDKTLNd-----------P--AQ-GSRLEELWSR 180 Chaetomium thermophil...
ERN10010     202 QGLQRRLLRVMRIVEALegKGFRVPLMKNEAQLAEKLA-GLVKQLK------------GagAElPRRVHNLLAV 262
XP_002514932 265 QSLQRRLLRIMRIMEALegKGYRMPLMKGETELAEKLA-AITRQLK------------GsgAElSRRVQNLLTV 325
XP_002893457 247 QSLQRRMLRVMRIIEGLegKGFRLPLTKGEAELSEKLT-AITRQVK------------GpgAElSRRVQSLQTI 307
EER96247     300 LVIQRRLLRFVRIVEALenRGYRSPLTKEEADLYERLV-AILKRLK------------GpsADlSKRVNTLLST 360
EGC38928     314 IELIQKYTEVWTSLEIY--QSKGKPFGVSEERLMKRIQ-EIYEELKq-----------P--NSiKSKVDEISNQ 371
Q55BX5       322 IELIQRYIEVWSNLEIY--QSKGKTFTTSEERIMKKIY-ELFEEINq-----------P--NSiKSKVEEISNQ 379 Dictyostelium discoideum
EFA85740     367 LLLLHKYIEVWSNLEIY--RGKGRPVTNAEEHLLRRVK-QILDILNq-----------P--NSlPSKVEEISNQ 424
EGG20687     345 IELLHKYIEVWSKVECY--NGKAKSVTSAEEQLLRRVK-MIGEALSq-----------PstNSiKNRVEELSNQ 404
XP_002140932 202 QHIIHQLVHISCMLEEY-----------GEKHNLAQINhHLDNQLNqtlhriqenqmrL--GVwQSIMNQIntd 262
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