3LIB,4XMQ,5LT9,3LIA,3LI8,3LIC,5AVE,3C8C,5T65,5LTV


Conserved Protein Domain Family
PDC1_MCP_like

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cd12913: PDC1_MCP_like 
first PDC (PhoQ/DcuS/CitA) domain of methyl-accepting chemotaxis proteins and similar domains
Members of this subfamily display varying domain architectures but all contain double PDC (PhoQ/DcuS/CitA) sensor domains. This model represents the first PDC domain of Methyl-accepting chemotaxis proteins (MCPs), Histidine kinases (HKs), and other similar domains. Many members contain both HAMP (HK, Adenylyl cyclase, MCP, and Phosphatase) and MCP domains, which are signalling domains that interact with protein partners to relay a signal. MCPs are part of a transmembrane protein complex that controls bacterial chemotaxis. HK receptors are part of two-component systems (TCS) in bacteria that play a critical role for sensing and adapting to environmental changes. Typically, HK receptors contain an extracellular sensing domain flanked by two transmembrane helices, an intracellular dimerization histidine phosphorylation domain (DHp), and a C-terminal kinase domain, with many variations on this theme. In the case of HKs, signals detected by the sensor domain are transmitted through DHp to the kinase domain, resulting in the phosphorylation of a conserved histidine residue in DHp; phosphotransfer to a conserved aspartate in its cognate response regulator (RR) follows, which leads to the activation of genes for downstream cellular responses.
Statistics
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PSSM-Id: 350338
Aligned: 223 rows
Threshold Bit Score: 56.7666
Created: 27-Aug-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3LIB_A        31 DMKANLAIARTISTTMESYet--------------------adRDEALLILENLLrdn----phLLGTYVAFEpdafdgk 86  Methanosarcina ...
EHL12663     105 SITLAENTAKAITDHLEEMykekdtespsepsalkdsilltphRAFEEHYILDSVwemirhdehIIGAGVFFEpnaf--- 181 Oribacterium sp...
SCJ51731      89 TVPQSPEAAALFQSELYSGknltp--------------ishsaEQFIVQTARNLVken----ngIIGVGVMFEpyaf--- 147 uncultured Buty...
ETP73084      75 IVERNDVLAKPLVNSVLTMvskndtgeklypsiiepsvnlteiRADEDTVIKNDLwaivdsnenIEGAGVFFNpymf--- 151 Lachnospiraceae...
WP_051629892  91 IPTGPDTYVKQLESQFYHKtltpi---------------ardaEKYLSESLRNTVagn----pdIESMIVLFEpyqf--- 148 Clostridium aer...
PKM73364      66 AYGLQLYVVSNYQGVSSSEektqtsev--------ygtsllhsAKDIEAFAIETGwqkvkgsesLIGLGVFFEpyaf--- 134 Firmicutes bact...
OOB78398      82 WSVVDTENSNNLSVVYNTPmsdi----------------lyttENYIINTTWSAVgnt----ddISGFGVYFEpyafd-- 139 Epulopiscium sp...
PKN74187      78 KLSRIQLLARNIRYSVQAGlitg-----------------eqfQLMVAAALRENPd--------ISSLCMAYEpsi---- 128 Candidatus Cloa...
WP_100303603 114 RIKSGPSAEPLYKSQVFDNmtlds--------------ygmrmEDYMMTTIKSSVlys----edIVGVGILFEqyam--- 172 Clostridium cel...
CCY37594      60 VLSPIASVINNIASRAEIMaignr--------------dtsdfLRLSEDILRNTPq--------LKDIAIALEpyyy--- 114 Alistipes sp. C...
3LIB_A        87 daeytnspahdgtGRFVPYWNkmngta-------svaplLHYDSSDYYQLPKAteKDVLTEPYFYe---GVFMVSYVSPI 156 Methanosarcina ...
EHL12663     182 ---------qsdvPEYAMYLGrdngdenkrffkfldykfYGDGAEEYYTKVSKekKSHVVDPFVSsi-tGETIFVLVVPI 251 Oribacterium sp...
SCJ51731     148 ---------esdiRDYGFYIDtntvdss----ftpyqsyEDYAKEASYMIPVQekRSYISQPYSYg---EGLVVSYGTPI 211 uncultured Buty...
ETP73084     152 ---------cediKYYEPFVTredlknl----tvgtldyDLFKDMDYFVRAGEtnQVIYGKPFTSdv-tGNTIIPASYPI 217 Lachnospiraceae...
WP_051629892 149 ---------qpnlRDYGIYAGkksqsge----leaygeyDQYSTQEYYHTPAIygTPHVTEPIKEd---GNIVVAYGVPF 212 Clostridium aer...
PKM73364     135 ---------dssiDLYSIYIDeamsqsq-----tvskytEDYTTQAYYMDAVNnnQVVITEPFTWn---GIYMVSVAYPI 197 Firmicutes bact...
OOB78398     140 --------ptrevYAFEIYADnaqnssf-----egiyrySDYSDKEYYSVTKDtgKSHISLPYDLeqadGQSVITISYPI 206 Epulopiscium sp...
PKN74187     129 ----------qnqPRAQVYFVrntelv------vnilnpEEYPYEDWYQIPIMsgEQRWSEPWYDragsQTLISSYSIPI 192 Candidatus Cloa...
WP_100303603 173 ---------ssasRSYGLYAGkdgtvk-------dcglyEDYSAADYFVKVMEekAQVITLPYQSn---GMMIITMAVPV 233 Clostridium cel...
CCY37594     115 ----------rnqKQFTAYSInengsirs---mmitdplYTYQYYDWYVIPKCtdSTYWTDPYIDrvweKLSLCSYTAPL 181 Alistipes sp. C...
3LIB_A       157 mk-eGEFAGIGGVDVSL 172 Methanosarcina mazei
EHL12663     252 lh-qDEFKGAVVVDLNI 267 Oribacterium sp. ACB1
SCJ51731     212 lh-nNKVLGTVIASVDL 227 uncultured Butyricicoccus sp.
ETP73084     218 vk-dGKFIGVVCIDIST 233 Lachnospiraceae bacterium JC7
WP_051629892 213 fy-kNRLKGVSVAEINL 228 Clostridium aerotolerans
PKM73364     198 ev-dGQVIGAVISDISM 213 Firmicutes bacterium HGW-Firmicutes-16
OOB78398     207 lganNQVAGVLALDVLI 223 Epulopiscium sp. Nuni2H_MBin003
PKN74187     193 is-nGRYIGILRLDTQL 208 Candidatus Cloacimonetes bacterium HGW-Cloacimonetes-2
WP_100303603 234 iv-nDRVLCVVSIDVDL 249 Clostridium celerecrescens
CCY37594     182 hdgdGRFIGVICASIET 198 Alistipes sp. CAG:831
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