Conserved Protein Domain Family
YrdD

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COG0551: YrdD 
DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains [Replication, recombination and repair]
Statistics
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PSSM-Id: 440317
Aligned: 562 rows
Threshold Bit Score: 81.835
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_012955193   1 MHEVIISEKPKSAEKIAKALSPNAQKKKYNRKINYWEFEENGKKTTVLSAVGHLYSLTSASSRDRLGFDLTWVPAYEVEK 80 
AKV03454      58 GKEKVLAELKTAAQEAEDILLATDPDREGEAIAWHLAEELTGKPLKAKRVEFHEITKNGVQKGVASPRALDKHLYDAQRA 137
WP_012175861  41 ELGIDIDNGFAPDYVNIKGKQKVIKALKSAVGDADDIYLAPDPDREGEAIAFHVADLLKKKGRRFHRVMFHELTKTGIQK 120
WP_013458656  20 KILGPNYEVKASVGHVADLPQRDLGVDLEHDFEPKYVVKKEKQKVVSDLKKAAGKAERVLLATDPDREGEAISWHVARLL 99 
WP_052590680 112 IDLVPITGKKDKIERIQELAKDATAIYLAPDMDREGEAIAHHLAEEIGKKKKMYRVVFNAVTKSAVNNAIENPTELNKSM 191
WP_014237640 152 GLFNSAQSRSEGDWLVGINGTRAYSILETRVTGERTLSTVGRVQTPTLALIVAREEAIRSFIAKPYYEIQGEFAAKTGVY 231
WP_014956947  53 EYVNIKDKSKVISNLKKLAKDAKEIYLAPDPDREGEAIAFHIMDILKKKDRIFHRVLIHELTKKGIQEALQKTLIPDANK 132
WP_053335899  47 GEIKIDYEVLEGKDKTISEIKKEAKNADEIFLAPDPDREGEIIAWHVEQELLKIVKDKSRIHRITFNEITKLAIEEAISN 126
WP_087036671     --------------------------------------------------------------------------------    
WP_094038384     --------------------------------------------------------------------------------    
WP_012955193  81 QKYTRDYINAIKKLSKGADKFVHACDYDVEGTLIGYNALKYACGNNAEAKASRMKFSTLTKKDIVEAYNTMRDIDIRQVD 160
AKV03454     138 RRVLDRIVGYDVSALVWSKLAFGLSAGRVQSVALRLIVDREREIEAFVPEEYWNIGTTLAKTQKNGAKKQPFNARLAQQD 217
WP_012175861 121 GLTEPTELNRNRYDAQQARRILDRLVGYQISPLLWRKVRNGLSAGRVQSVAVRIICDREREIFAFDPQEYWSITAALEGA 200
WP_013458656 100 DLDPQKPLRVHFHEITPRVIKEAVKKPTPIDQNLVDAQQARRVLDRLVGYNLSPVLSAQFRQRALSAGRVQSVALRLVTE 179
WP_052590680 192 YESQQTRRILDRLVGYKISPILWDKVQRGISAGRVQSVALRIIVEREDEINAFEPEQWFSIHGVCEKDAQKFEVKYYGES 271
WP_014237640 232 GAKWIDTAFQADPSTPDARAERLFDKAKADAIVAKCTGKRPSSVADATTDSISTPPKLFDLTTLQREANKKFGFSASQTL 311
WP_014956947 133 YDAQQARRKLDRLVGYQISPLLWQKVQRGLSAGRVQSVAVKIICDREREIRKFIPEEFWTITADLLSQSPPKFNAALIKI 212
WP_053335899 127 PSSVNLNKVNAQQARRVLDRLVGYEVSPVLWRKIAKGLSAGRVQSVALKLIVDREEEIVNFKPEEYWSIEVTFISKVDKK 206
WP_087036671     --------------------------------------------------------------------------------    
WP_094038384     --------------------------------------------------------------------------------    
WP_012955193 161 HGIARHMLDYYYGMNISSALMKAVRASSSRFISLSAGRVQTPTLSILVDREKEIQSFVPEPYWMIKAKSDYDIIADHVEG 240
AKV03454     218 GKKIEVKDGETAGRVKSDLDGATYRIAKITKSERKRKPYAPYTTSKLQQDAVNRLGFGAKRTMQVAQGLYEGVDLGKDGG 297
WP_012175861 201 NPPRFEAKLVKKGTKNITIGNQAEADRIVDELSRQAFTVDKIVQKTIKRNPQPPFTTSKLQQEAIRKLGFTAKKTMAVAQ 280
WP_013458656 180 REAEIEAFVPKEYWTLTGTFDAGARFAAELYEIDGKRVLDKKKENFLITSEAQARAVEAEVRAVPAWQVAAVERKEKRRH 259
WP_052590680 272 ATKKTDLTEKDLVDKILSDVKGKSLDVIDVKKKERKQNPTPPFTTSKLQQEAANKLGFTAKRTMMTAQKLYEGIQLTEHG 351
WP_014237640 312 AIAQALYEKQKVLTYPRTDSSALPEDYLDTARATLTRLGDGGLTVSPFAAKAVAMVKPDKRIFNNAKISDHFAIIPTGLV 391
WP_014956947 213 NNKKAKVTNEKQASGILKDLKAAQFVIHEIKTKTIKRNPSPPFITSKLQQDAINRLRFSAKKTMIVAQQLYEGIEIGTGG 292
WP_053335899 207 SITIIAPLVQINKKKPKIENKEKADKIVEEIKNHDYKIISIKDTNRLKNPLAPFMTSTLQQVAYNRLGFNVQKTMQIAQK 286
WP_087036671     --------------------------------------------------------------------------------    
WP_094038384     --------------------------------------------------------------------------------    
WP_012955193 241 KIFDEERAKKIYADCQGADADVTSVKVTESIRKPPIPFNLGGLQSEAHTVFGFSPKRTQVAAQNLYVGGYTSYPRTSSQK 320
AKV03454     298 PVGLITYMRTDSTRVSPDALAAAREYIENSYGKNSLPAEPNVFKSKKNSQDAHEAIRPTSLEHTPETVKKHLKDEQYKIY 377
WP_012175861 281 ELYEGIDLGPGEPVGLITYMRTDSTRIAPEAAHEALAHIRSVFGNDYAPDRPRFFANKNKVQDAHEAIRPTGISYTPESV 360
WP_013458656 260 ALPPFTTSTLQQAASSRLGWGAGRTMRVAQRLYEGVNLGPEGPVGLITYMRTDSVRIAPEAIAEARAFIPEQYGPDYLPP 339
WP_052590680 352 MQGLITYMRTDSVRTAPEAMGALREFILDKYGKDYLSVEPIEYKKKGSSKVQDAHEAIRPTNLAFTPDSVRGDLEPDQQK 431
WP_014237640 392 SATLSGEEAKIFDLVSRRFIAAFFPPAKYLQTVRLTVVEQETFRASGRVLVEEGWLAVYGKEADDSEDPALCAVAKDELP 471
WP_014956947 293 PEGLITYMRTDSTRIAPDAAREAQAFIAQTIGDEFALSTPRFFKNKNKVQDAHEAIRPTSVFHSPEKIKNFLSPDQFKLY 372
WP_053335899 287 LYEGVPLEDASTPIALITYMRTDSLRISDVAIKQTRKFITDTYSKEYLPPKANAYTKSGSAQDAHEAIRPIDITLTPEYV 366
WP_087036671     --------------------------------------------------------------------------------    
WP_094038384     --------------------------------------------------------------------------------    
WP_012955193 321 LPESLDFKNIFAGLAKDPEFKKHIFDLPAKLKPNEGKKTDAAHPAIHPTGVLPSNLSADEAKIYSLIVYRFISVFSENSK 400
AKV03454     378 KLIWDRFIASQMKDAVFDQTSVDIEAKAKSASYMLRSSGRVLKFAGWLEVYGSGVESTNQAGGEDDKTDADGAKEPEEGE 457
WP_012175861 361 KRYLSKDQLTLYTLIWKRFVASQMSEAQIDQKTITIAAGDYLLSVSGSTVRFPGFMALYQPEEDKNGAPDKDKGDKLPQL 440
WP_013458656 340 KPNYYRGKKQGVQDAHEAIRPTSVQRRPEQVKPFLSDEEFKLYDLIWRRFVASQMTPAVYDQTAITVEGGKFTFRAAGSI 419
WP_052590680 432 LYELIWNKFISSQMSQAIIDQTTVMMEREGHFFKANGSIIKFPGFRTVYLEAAAEKRSRKGGDDEDDNDAGEVKSGLLPV 511
WP_014237640 472 ENRRIEAVSLKTKPPLRFTEATLLGAMESAGADIEDDELREAMKDRGLGTPATRASTIEALLADKDGKGRSIQPYVVREK 551
WP_014956947 373 DLIWKRFVASQMAQAIIDQKTILIKATDKYMFSVSGSTVRFLGFMSLYSPNNESKEKDIQALPDAKEGTVLKTLEIFPKQ 452
WP_053335899 367 KKYVSSDQAKLYDLIWKRFVSCQMKPAQYAQRQVSIEGGPFIFKVTGSTLIFDGFLKVYNDTEDSQDSDEKDKKVTIPAE 446
WP_087036671     --------------------------------------------------------------------------------    
WP_094038384     --------------------------------------------------------------------------------    
WP_012955193 401 LETMKVNLKVADEKFTFSRKRVSYEGWLKHYPFKKQENDAFPPINKGDQLKIHKILVEEKETKPPARYNEASLIKELEKR 480
AKV03454     458 ATLPELAEGEVLELVTPPGVLAEQKFTQPPARYNEGSLVRELEERGIGRPSTYAEIISKVQARDYVEKLDGRNFRPTLLG 537
WP_012175861 441 DEKEVLKLIELDPKQHFTTPPPRFSEASLVKELEENGIGRPSTYATILSTIRDKGYVDLINKAFRPTELGFIVNDLLVEN 520
WP_013458656 420 LKFDGFLRVWGRDQQEEQPLPEVDAGAPARLVELASEQHFTQPPPRYTDASLVKKMEELGIGRPSTYAPTIDTLERRAYV 499
WP_052590680 512 INTGESFTPIEGPTEQEHWTSPPPRFNEASLVKSLEEFGIGRPSTYAAIISNIQDRGYVEKTENRFLPTELGIVVCRMLV 591
WP_014237640 552 KNLAPTNKAFKLVKFLRENGLTALASAETTGLWEFKLREMEKGRCQRSDFMGEIAALAREFVTRVQALAKDLPASAAMQA 631
WP_014956947 453 HFTKPPPRFSEASLVKELEKNGIGRPSTYASILSVIRDKGYVDLVNRYFAPSELGFIVNDLLVASFPNILNISFTAQMET 532
WP_053335899 447 IEENMSLNKKDIDPKQHFTQAPPRFTEASLVKELEKEGIGRPSTYATILKTIQLRSYTTIDNKKRFVPTELGTVVTKMLS 526
WP_087036671     --------------------------------------------------------------------------------    
WP_094038384     --------------------------------------------------------------------------------    
WP_012955193 481 ELGTKATRADIVAKLYDRKYIEGKKIEVKPLGINIIDTLNEYCKDLTSEELTREFERELEGIDTDKYTKEQILENGEKEV 560
AKV03454     538 KMVVDGLVNSELDFMDPTFTSSMEQELDAVEAGTEERTVLLSRFYKKFREQLDKSKKGKRWNPDPEPTGEICEICGPNSE 617
WP_012175861 521 FPTILDIEFTANMENDLDRIESDQLQAVRLLERFYGPFSQRIEAAKDRMRSVKGVGMDTGLSCPECGKELKIKLGKNGPF 600
WP_013458656 500 ERQGRALKPTELGKRVIGFLVEHFPRVVAYEFTAQVEDRLDEVEEGKQAWPAVVREFYEPFTEELSRVPRKTCPVCGRPL 579
WP_052590680 592 ESFPNVMDIKFTAGVEELLDQIEDGTIKYKKVLKEFWKEFEVTLEKAKEEMKNLKKQLIPTGINCLKCEDGEYHIKWGRN 671
WP_014237640 632 KPMAAACPKCGNTTMGATAKTFSCSCGFRIWREVAGRVLSDTEGEKLIAQGSLPTLAGFTSSKKKPFAAGLKLAEDLSGK 711
WP_014956947 533 NLDDVETGNLEEVQLLTDFYASFKKYLDAASENMISLKGVGVETGLVCPSCGKQLNIKIGRNGHFLACTGYPDCSFTSNY 612
WP_053335899 527 QNLSKIMDLKFTANMEKDLDKIANGELQRDNLINLFYNDFEKDLETFKGEDNKKIAQKTGMTCPKCATGELLIRFGKSGP 606
WP_087036671   1 -------------------------------------------------------------mskidsslfstkemapewe 19 
WP_094038384   1 -------------------------------------------------------------mskidpslfhthehaprwa 19 
WP_012955193 561 KTILAEINQNKKQIGEKLy-----------------------gAYQETNvVG-EC-SCGGKLIKRYSPRtkNTFVGCSNF 615
AKV03454     618 DEKLRALPPGEMMKRWSKngwflgcsnypkckntrdlgpdgtgAAKPRD-AGvDCdKCGKPMVIRSGRY--GEFLSCTGY 694
WP_012175861 601 LACSGYPDCKFSRNYARTdkgtv----------------epvePDLTVA-EGkSCeKCGSPMVVKQGRY--GDFLACSAY 661
WP_013458656 580 EIKVSRYGQFLGCTGYPEctyte----------------pleeKKEAEP-IGeDCpKCGAPLVRKWGRY--GSFIACSAY 640
WP_052590680 672 GQFFACSNYPDCNSTQDFkkhld----------------gsyeILPKNW-FHdNCpNCQKRLEVKKGKY--GRFVRCEDY 732
WP_014237640 712 VDFVFEQHTESSEAAAVA------------------------------------CpQCGKPMRRRKGGT--GFFWGCSGY 753
WP_014956947 613 LRDEKGNISIVEKIVDNT--------------------------------KVkDCiKCGKPMVQKDGRF--GLFLACTGY 658
WP_053335899 607 FVGCNNYPECDFTSNFERledgt----------------irliESELIV-LEeNCpKCEHKLRQLQGKY--GKFIACSGY 667
WP_087036671  20 qspcpqcgaalelrhgkhgaflgcvsyptcdylrplkvvepdqDIEKVL-EGsECpQCQHPLALKKGRF--GLFIGCTHY 96 
WP_094038384  20 eepcpqcgarlelrhgkhgafigctayphcdyrrpfkvvehdeDVERVL-EGsQCpLCDHPLAIKKGRY--GLFIGCTHY 96 
WP_012955193 616 PKCKVTYSLPKGanmlkktcptcglpmisiKKaSGkgrdhVcldsncgkdvsrrqapevvgKCPE--Cg-kDLLKRSGR- 691
AKV03454     695 PQCKNARPVP-----------------------LG-----V--------------------ACPK--Cg-gDIIEVRPKk 723
WP_012175861 662 PDCKSTQSLNSGan---------------aAP-IG-----V--------------------KCPEpgCn-gDIVEKKSK- 698
WP_013458656 641 PKCDYTRDEA--------------------PS-TG-----I--------------------TCPK--CkegEIVQKTSR- 671
WP_052590680 733 PQCDTTLPYT-----------------------LD-----I--------------------TCPE--CnvgKFAEKKSR- 761
WP_014237640 754 PDCNHTMDDKDGkavpkqp-----kvarqaGK-VG-----E--------------------TCPT--CqkgKLTGRQSN- 799
WP_014956947 659 PDCKHTESVNGEys---------------sKD-IG-----V--------------------KCPKadCs-gTILEKKTK- 695
WP_053335899 668 PKCNYVQQVK-----------------------AG-----F--------------------NCPL--CqtgDVIQRMFK- 696
WP_087036671  97 PECHHIADINDQ------------------GD-AE-----P--------------------SCPM--CnkgLLVARTSR- 129
WP_094038384  97 PHCHHVADLNDQ------------------GD-EE-----P--------------------PCPA--CgegHLQARTSR- 129
WP_012955193 692 Y-G-EFVGCSGFp----rCRFTCSVDE 712
AKV03454     724 KgGkTFYGCSRYndetvkCDFKLWQKP 750
WP_012175861 699 R-GkVFYGCSRFp----kCTFASWDKP 720
WP_013458656 672 R-GkPYWRCNKQg-----CDFLVFDPP 692
WP_052590680 762 Y-GkIFYGCSNYp----nCENASWTKP 783
WP_014237640 800 --GtSFLGCTKYp----aCRHYerv-- 818
WP_014956947 696 R-GkIFFGCSKYp----dCTFASWDKP 717
WP_053335899 697 --GsRFWGCSNYp----nCKFITSGET 717
WP_087036671 130 Y-GkRFYACNHYp----qCRFISNDKP 151
WP_094038384 130 Y-GkRFYGCSRYp----aCRYVINDKP 151
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