3FBR,4YG7,3DNV


Conserved Protein Domain Family
HipA_Ec_like

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cd17808: HipA_Ec_like 
Click on image for an interactive view with Cn3D
type II toxin-antitoxin sytem toxin HipA from Escherichia coli and similar proteins
This family contains type II toxin-antitoxin (TA) system HipA family toxins similar to Escherichia coli HipA, a serine/threonine-protein kinase that phosphorylates Glu-tRNA-ligase (GltX), preventing it from being charged, leading to an increase in uncharged tRNA(Glu). This induces amino acid starvation and the stringent response via RelA/SpoT and increased (p)ppGpp levels, which inhibits replication, transcription, translation and cell wall synthesis, reducing growth and leading to persistence and multidrug resistance. HipA is the toxin component of the HipA-HipB TA module that is a major factor in persistence and bioflim formation; its toxic effect is neutralized by its cognate antitoxin HipB. HipA, with HipB, acts as a a corepressor for transcription of the hipBA promoter. In the Escherichia coli HipAB:DNA promoter complex, HipA forms a dimer and each HipA monomer interacts with a HipB homodimer which binds DNA. The HipAB component of the complex is composed of two HipA and four HipB subunits.
Statistics
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PSSM-Id: 341493
Aligned: 55 rows
Threshold Bit Score: 437.789
Created: 1-Aug-2017
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 22 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
3FBR_A        19 LANGAHTFKYAPEWlasRYARPLSLSLPLQRgn--iTSDAVFNFFDNLLPDsPIVRDRIVKRYHaksRQPFDLLSEIGRD 96  Escherichia col...
OGU20019      25 SSTGRMQLVYDPSWlasENSRPLSLSLPLGQhp--lAGTAVECFFDNLLPDnDAIRRRIQARFGaasDRCFDLLWHIGRD 102 Geobacteraceae ...
OHE67131      25 GGTGVHEFRYEDSWlvhAQTRPISLSIPLGEtv--yRGDAVSAFFDNLLPDsSEIRQRIRSHYGaasLSAFDLLAEIGRD 102 Treponema sp. G...
OGO29024      12 APQGRHEFRYAKSWleaPGARPLSLSMPLQPpdtpyRDARVEAFFDNLLPDsPEIRRRVQSRFGtasTAAFDLLTEIGRD 91  Chloroflexi bac...
ASL46622      24 RARDGERLSYFDTWisdEQGRPLSLSMPFTPgnqpyRGDLVSAFFDNLLPDsDAIRRRLAQRHHtgsTNAFDLLVALGRD 103 Burkholderia sp...
KZK74598      25 RPNGMHEFGYTASWltlPHARPISLSMPLRTep--yRGEAVYAYFDNLLPNnDQIRRRIQNRFAaggIDPFSLLQETGRD 102 Pelodictyon lut...
OIP99564      30 FKTKPQQFQYADQWlehPSRRVLSLSMPFKPqnlpfEGDVVENFFDNLLPDsDKIRKRIQQKYAvrnSSSFELLAEIGRD 109 Zetaproteobacte...
WP_064499894  19 QTRGSHALHYDPSWissSAGRALSLALPFTPgnvphRGDVVRNFFDNLLPDsDAIRARIRDRFStgsTGTFALLSAIGRD 98  unclassified Op...
XP_018007546  25 PARGDMELVYDPHWmasEAGRPLSLSLPFTGsq-alRGAPVSHYFDNLLPDsESIRRRLATRFKtdsLEAFDLLEAIGRD 103 Hyalella azteca
EAQ68002      12 PARGPQQFNYAESWlqsSQFRPLSLSLPAGLgrsalSGHAVESWFDNLLPDsDTIRRRAQARFQaasTSAFDLLAAVGRD 91  Synechococcus s...
Feature 1                                                                ##### #                 
3FBR_A        97 SVGAVTLIPEDetv-thPIMAWEKLTEARLEEVLTaykadipl-gmireenDFRISVAGAQeKTALLRiGNDWCIPKGIT 174 Escherichia col...
OGU20019     103 CVGALQLLPETeephgvMDISAEPLTDTEIAETLRnyqtmpl---gmqkdsDFRISLAGAQeKTALLRlGNRWCRPHSAT 179 Geobacteraceae ...
OHE67131     103 CVGAIQLLSDDephspiDRIEGRPIDEHEIADILKgltamgv--ggrfadeEFRISLAGAQeKTALLRhNDQWLVTHGST 180 Treponema sp. G...
OGO29024      92 CVGAVQLLAPDarpegiHRIEGEPLTDDAVANILRsavsapa--lgqrdndSFRISLAGAQeKTALLWhNGSWHRPRGAT 169 Chloroflexi bac...
ASL46622     104 CVGAIQLLPADerptdlYNISGAPLSEPEIAQLLRnataaapl-gqyddgaDLRLSIAGAQeKTALLRhEGEWIYPTGST 182 Burkholderia sp...
KZK74598     103 CVGAIQLLAPNdtgediRTIRATALDPAGIASLCNnttrdaafgkreqagdEFRISLSGAKeKTALLFhEGRWMIPHGTT 182 Pelodictyon lut...
OIP99564     110 CVGAIQLLAEGeqpegwDTIKAKPLSDLEVEQQLKvassdaf---lreetdEFRISIAGAQeKTALLWhEGQWCLPLGQT 186 Zetaproteobacte...
WP_064499894  99 CVGAIQLLPDDqtpegfDRIEAESLTESGVEQAIAaslsgarv-lgqpednDFRISLAGAQeKTALLYhRKKWCRPLGAT 177 unclassified Op...
XP_018007546 104 CVGAIQLLGADeqpakvTCIEGTALDEGEVEQLLLlaagsggq-praeddeHFRLSLAGAQeKTALLWhEGQWKRPHGAT 182 Hyalella azteca
EAQ68002      92 CAGAVQLLPPDevpsgfDRIEARPLSDQEIGQRLRavtatpapgslgpepdELRLSIAGAQeKTAFLLhDNQWCLPLGST 171 Synechococcus s...
Feature 1            # #                                    #              #####              #  
3FBR_A       175 PTTHIIKLPIgeirqpnatldlsqSVDNEYYCLLLAKELGLnVPDAEIIKAgnvRALAVERFDRRWnaertvLLRLPQED 254 Escherichia col...
OGU20019     180 PTTHIFKLPIgqtpr----idlsdSVENGWLCHRFLKEYGIpVATADICFFddvKTLVVERFDRRWskdgtrIIRLPMED 255 Geobacteraceae ...
OHE67131     181 PSTHIVKLPLgriggl--gldmtgSVENEWLCAKLATAVGLeAASCEIGRFedvTALIVERFDRRRsvdntrILRLPQED 258 Treponema sp. G...
OGO29024     170 PTTHIFKLPLgrvgnm--qadlttSVENEWLCAQIVRAFGLdVARCDMAHFenqRVLIVERFDRRLsrdstwWMRLPQED 247 Chloroflexi bac...
ASL46622     183 PTTHIFKLPLglvgnm--qadmrtSIENEWLCARIVAAYGLpVANCEVATFedqKALVVERFDRRLssdarwIVRLPQED 260 Burkholderia sp...
KZK74598     183 PSTHILKLPLgtigqn--hinmdlSIENEWLSLKILEAYGLpVAKATIETFsdvKSLVVERFDRKPsregdwIMRLPQED 260 Pelodictyon lut...
OIP99564     187 PTTHIMKLPLglvgnm--dadrfsSVENEWLCSNIMDAYTIdTAHCEMGTFgetKALIVKRFDRKLsqdgsyWLRLPQED 264 Zetaproteobacte...
WP_064499894 178 PTTHIFKLPLglvghl--qmdmqdSVENEWLCSRIMQGFGLdTARCEILQFgrrKVLAVERFDRARqpa-gwIARLPQED 254 unclassified Op...
XP_018007546 183 PTTHILKLPIglvgar--kadfgtSVENEWLCMELLRELGLpTAKTAMLQFgrqKVLCVERFDRQMhssgtwLMRLAQED 260 Hyalella azteca
EAQ68002     172 PTTHLFKLPMgvigkg--qidfssSVANEWLCSRLLHAYGLpMASTEMAEFdgeRCLIVQRFDRRLhtsgayWLRLPTED 249 Synechococcus s...
Feature 1                                                              # # ## #              ##  
3FBR_A       255 MCQTFGlpsSVKYesdgGPGIARIMAFLmgSSEALKDRYDFMKFQVFQWLIGATQGHAKNFSVFIqaGGSyRLTPFYDIi 334 Escherichia col...
OGU20019     256 MCQALGvppVFKYeedgGPGIRGIMDLLlgSEAAAADRRLFMKTQLLFWLLGAIDGHAKNFSIYLlpRGAyRLTPLYDVm 335 Geobacteraceae ...
OHE67131     259 FCQITGtspSGKYesdgGPGIEAIMRILlgSQDAAKDREVFFTAQVLFWLLAAPDGHAKNFSVFIerGGRfRLTPLYDIi 338 Treponema sp. G...
OGO29024     248 MCQATGtppGRKYesdgGPGIQDIMSLLlgARDAHADRQTFFKTQILFWMLCATDGHAKNFSVFIepGGRfSLTPLYDVl 327 Chloroflexi bac...
ASL46622     261 MCQATGrpsHLKYqadgGPGIAEIMDVLlgSENADQDRLQFFKTQLVFWLLAATDGHAKNFSIFHlpGGRyRSTPLYDVl 340 Burkholderia sp...
KZK74598     261 LCQATGtppWQKYesdgGPGIEAIMQLLlgSARAEDDRKLFFQTQVAFFLLAAIDGHAKNFSIFLgpTGTfHLTPLYDTl 340 Pelodictyon lut...
OIP99564     265 MCQALGlpsSLKYesdgGPGMVEILMLLrgSSVSHQDRRSFFKTQVIFWMLAATDGHAKNFSLFHeaSGTyRMTPIYDVl 344 Zetaproteobacte...
WP_064499894 255 FCQALGlpgTKKYesdgGPGMLDIIRVLdaGSQATDDKKAFLKAQMVFLLLAATDGHAKNFSLFHerGGTwRLTPFYDVl 334 unclassified Op...
XP_018007546 261 FCQATGtapHRKYeadgGPSMADIAQVLagSVNAQADLKNFLKTQLLFWMMAAPDGHAKNFSLRIlpRGRyALTPLYDVm 340 Hyalella azteca
EAQ68002     250 CCQASAtpaAQKYenngGPGMAAIAELLa-QSSERNDLTTFFKAQVLFWMLRAIDGHAKNFSLFLnpGGHfQLTPLYDVl 328 Synechococcus s...
Feature 1                                                                                        
3FBR_A       335 SAFPVLggtg--ihiSDLKLAMGLNAskgkkTAIDKIYpRHFLATAKVLRFPevQMHEILSDFARMIPAALDNVKTSLpt 412 Escherichia col...
OGU20019     336 SAWPFVarke--lhqKQMKMAMSVDGkn-khYFWGEIIrRHWSGMSRKARFPeeELDSIIQELADPMEDVIARVVASLpa 412 Geobacteraceae ...
OHE67131     339 SAYPVMghgkglippEKLKLAMAFGCkn-rhYEWDKISlGHLRETARRCGLEg-SIDAVLAKLATTIPNAVATVSASLpk 416 Treponema sp. G...
OGO29024     328 SAYPIIghganrlapEKVRMSMAASGrn-rhYRWSQIQrRHWLDTANACNLGp-LAERLIAQLTERTPAVLEQVSRQLpa 405 Chloroflexi bac...
ASL46622     341 SAHPIIgsgrnqiarQKAKMAMAVRGst-nhYLIDRIQqRHWVEQARQVGLGrvAAQEIIEEVVDATDGVISAVNAQVpp 419 Burkholderia sp...
KZK74598     341 SAFPVIgngrnqlppGEITMAMALWGks-rvYRWAGMTrRHFITTARSCGLTgrTAETIIDDMLQRTPQVLMDTARQL-- 417 Pelodictyon lut...
OIP99564     345 STWPIMgkkanqlspHDAKLAMAFKSkn-vhYKLKEISpRHFYNMAEKLGLGa-EVHDMLVEIVADTPSVIAKVKAMLpa 422 Zetaproteobacte...
WP_064499894 335 SAWPVIgrgpnridwHKARLAMCVRSkn-ahWKLAGIKaRHWDAICRSAGLG--NADSLLGEIAMQLPRVIEAANRELpd 411 unclassified Op...
XP_018007546 341 SIWPVEgnsasqfswHKAKLAMALHGkn-rhYHFKNIQrRHFNAVAAKFCQRe-SAEDVIEEVLQGLEPAMAAVAARLpa 418 Hyalella azteca
EAQ68002     329 SAWPVIgrrsdqwpqQKLKMAMAWLGekgryYKPLEITgRRMLLTAKRLGLA--DASTILNKQIVHTPTAIAAVQAQLpa 406 Synechococcus s...
Feature 1                               
3FBR_A       413 dfPENVVTAVESNVLRLHGRLSR 435 Escherichia coli K-12
OGU20019     413 gfPAAVVEPVVNGMRAAKARLGV 435 Geobacteraceae bacterium GWF2_54_21
OHE67131     417 gfPGEIAEPIIKGFEERSKMIED 439 Treponema sp. GWC1_61_84
OGO29024     406 dfPVSVAEPIFDGLKDAAKRLSA 428 Chloroflexi bacterium RBG_16_52_11
ASL46622     420 dfPGGLAESILKGVVKQRDRLRA 442 Burkholderia sp. AD24
KZK74598     418 --PSGFPESVAGAIFDGVEQSLE 438 Pelodictyon luteolum
OIP99564     423 nfPAAVADAIFAGLNEKADEIRR 445 Zetaproteobacteria bacterium CG2_30_46_52
WP_064499894 412 dfPSSVSDRIFEGMQQTARQLDL 434 unclassified Opitutaceae
XP_018007546 419 gfPEKVASAIFSGVWRMARVLAD 441 Hyalella azteca
EAQ68002     407 dfPPAISEAVFTGLQTSANQLER 429 Synechococcus sp. RS9917

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