4E6K,6E6Q


Conserved Protein Domain Family
Fer2_BFD

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cd19945: Fer2_BFD 
Click on image for an interactive view with Cn3D
bacterioferritin-associated ferredoxin (BFD) [2Fe-2S]-binding domain
This family includes Escherichia coli and Pseudomonas aeruginosa bacterioferritin-associated ferredoxin BFD which binds an [2Fe-2S] cluster and appears to interact with bacterioferritin (E. coli BFR/YheA and P. aeruginosa BfrB), a dynamic regulator of intracellular iron levels. It has been suggested that BFD and bacterioferritin form an electron transfer complex which may participate in the iron storage or iron immobilization functions of bacterioferritin. For Pseudomonas aeruginosa, it has been shown that mobilization of Fe3+ stored in BfrB requires interaction with BFD, which transfers electrons to reduce Fe3+ in the internal cavity of BfrB for subsequent release of Fe2+. The stability of BFD may be aided by an anion-binding site found within this domain. In addition to BFD, the BFD-like [2Fe-2S]-binding domain is found in a variety of proteins such as the large subunit of NADH-dependent nitrite reductase and the Cu+ chaperone CopZ. It comprises a helix-turn-helix fold, and binds an [2Fe-2S] cluster via 4 highly-conserved Cys residues, found in loops between the alpha-helices. For the class of proteins having a BFD-like [2Fe-2S]-binding domain, the Cys residues are organized in a unique C-X2-C-X31-35-C-X2-9-C-arrangement. [2Fe-2S] clusters are sulfide-linked diiron centers, a primary role for which is electron transport.
Statistics
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PSSM-Id: 381078
Aligned: 22 rows
Threshold Bit Score: 71.4621
Created: 24-Jul-2018
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1: Fe-S cluster binding site [ion binding site], 4 residue positions
Conserved feature residue pattern:C C C CClick to see conserved feature residue pattern help
Evidence:
  • Structure:4E6K; Pseudomonas aeruginosa BFD binds an [2Fe-2S] cluster, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          # #                                #  #             
4E6K_I        1 MYVCLCqGVTDNQIRDAIYeg-cCSYREVREATGVGTQCGKCASLAKQVVRETLN 54  Pseudomonas aeruginosa PAO1
Q6LVB9        1 MYVCLCfGISDKKIIRLTQqnkvSDIRSIREITSLGSQCGKCIRQAKNIIEETIA 55  Photobacterium profundum
WP_010872154  1 MYICVCrGISDKQIEAAAQqg-iTSLEELSESMGVGADCGVCQGHACQVLEAIAR 54  Synechocystis
EWH09509      1 MYVCLCnGITDKDIIAAAEqg-cSSLVELRKQMSIANDCGKCRKQAINILREAQP 54  Catenovulum agarivorans DS-2
KPK51966      1 MYVCVCnAITDKQIRRAARsg-vNSLYELRGTLGVAAGCGSCARTAQEILDEEIL 54  Thiotrichales bacterium SG8_50
EEG07316     21 MYVCLChGVTDTQIRDAVMdg-aTRLRDVAQQLGVATDCGRCACCAHQLIKETLT 74  Pseudogulbenkiania ferrooxidans 2002
EED31524      1 MYVCICnGITDKQIRNAIAeg-aNSLQLLRDELGVASQCGSCTDQALSFLEDNPA 54  gamma proteobacterium NOR5-3
ODS63709      1 MYVCLChGVTDSDIRRAAEag-cGSLAELTMRTGLGSGCGTCGEMASEILAEASA 54  Arenimonas sp. SCN 70-307
PKM22192      1 MYICLCkGVTDGQIRAAVSsg-cDTLKSLRSGLGVGSQCGKCMVHAADLIRHSST 54  Gammaproteobacteria bacterium HGW-Gammapr...
KGE02554      1 MFVCLCnGITESQIRAAAStg-iSTLEELTEHLGVASQCGQCGAMAQAVLEEGGG 54  Pseudohaliea rubra DSM 19751

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