2JEB


Conserved Protein Domain Family
Rrp4

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COG1097: Rrp4 
Exosome complex RNA-binding protein Rrp4, contains S1 and KH domains [Intracellular trafficking, secretion, and vesicular transport]
Statistics
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PSSM-Id: 440714
Aligned: 63 rows
Threshold Bit Score: 227.039
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2JEB_I        10 KIVLQ-----PRSIVVPGELLA-EGE--FQipWSP-YILKINSKYYSTVVGLFDVKDTQFEVIPLEGSfYYPKINDIVIG 80 
ABK78159       1 ---MD-----DRKRVMPGDVIT-TGP--YR--PEQ-NTILEGRNIVATVVGVSEIADDAVSVIPLTGM-YYPKVGDLVIG 65 
EHR76670      11 KEMSNgqngaELRLVTPGMAIGpVAG--KR--IGS-GAIAQNDTIIATRLGWTKEFNNTVSVDPINSA-YMPRSGDLIVA 84 
AFH43325       5 VFYVQ-----QRDIVLPGDLVG-EGK--IE--TNSlYIYNIGNKYFSSIIGMVEIKDDKLFFYPKEQI-YIPKPNDLVIG 73 
AFU59312       1 ---------mRRRYVIPGDKIA-EGN--FR--PLM-NVIKAGNALIATRIGIAETGRDGVKVIPLSGV-YIPRVNDLVIG 64 
ALI34950       1 --MQEi----KRRYVIPGDKII-EGN--YK--PLM-NVVKSGNYLVSTRVGIAEAGKDGVKVIPLSGV-YIPRVNDLVIG 67 
CUR51151       1 --MMDv----KRRYVIPGDVIA-TGP--LR--PEQ-NVFQDGDRMISTCVGISEIFENSVKVIPLTGG-YMPKANDLVIG 67 
WP_084790522   1 --MNDv----RRRYVIPGDKIV-EGN--YR--PIM-NVVRSGNALIATRIGIAEAGRDGVKVIPLSGV-YIPRVNDLVIG 67 
WP_048104768   1 --MSNe----RKRHVIPGEVIT-SGP--YR--AEQ-NTIQVGDKIVSTIVGLSDVHDGSVRVIPLTGG-YIPKDDDLVIG 67 
WP_103287607   1 --Mi------AKRYVLPGDLIV-EGNphLK--PLA-NVIKVGDRLHSTRIGIVEISQNGVKVIPLSGI-YIPRVGDLVIG 67 
2JEB_I        81 LVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINV-GEDLRRYLDVGDYVIARIENFDRSIDPVLSVKGKDLGRVSNGIVI 159
ABK78159      66 KVTSHSSLAWEVEINSCYVGFLPASDVFGRGFDAqGDELSSKLAKGELVAARVANFDRTRDPLVTVAERDLGKIDTGDLV 145
EHR76670      85 VVAEVRNNLWFMNINGPFQGLLPMSLAPWK---VeFGAARQHMGIGDVVLARVQEVDECHNVVLTMKGVGLRRLNQGTIV 161
AFH43325      74 LITDVGPTYWDVDLNSPYEGQLPVSETPLRQTHAtVDTMRKFLSIGDFVALKVLSFDRLRDPLLTMRGKGLGKIYGGKVI 153
AFU59312      65 KVIDHSSLSWEVDINSCFSAHLPAQDVFGRDFSPaRDDMSRHFAIGDMITARIMAFDRTRDPMLTVQDRDLGKIPRGEVL 144
ALI34950      68 KIIDRSSLSWDVDINACFFAHLPAQDVFGRDFSPaKDDMGRQLSIGDLIIARIVSFDRTRDPMLTVQDKDLGKIPYGEFI 147
CUR51151      68 KVIGTSPLSWEFDINSCFVGFLPAQDVFGRDYSPtKDELRQRLDIGDLVAVRIANFDRSRDPLLTVQDRDLGKIDSGELI 147
WP_084790522  68 KIVDHTSLSWEVDINSCFSANLPASDVFGRDFSPaRDDMTKHLAIGDMITARVAAFDRTRDPMLTLQDRDLGKIPRGELL 147
WP_048104768  68 KIASHSSLSWTADINSCYVGMLPASDVFGRDYSSsSDDMNSKLAKGDLIAARIVNADMTRDPLITISGRELGKIDSGELV 147
WP_103287607  68 KIIDYSALAWEVDINSCFLGHLPAQDVFGKEFSPsRDDLTKRFNIGDVIACRILNFDRTRDPLLTVADKDLGKIGEGEIV 147
2JEB_I       160 DIMPVKVPRVIGKNKSMYETLTSKSGCSIFVANNGRIWATCPSRFSEEILIEAIRKIENESHIKGLTDRIKQFIEEKLGE 239
ABK78159     146 TISPSKVARLIGKRGAMIETIEKATGATVTIGQNGRVVVSCESPDGLLKAKKAIQMVEEQAHMSNLTDRVRSMLESRDGC 225
EHR76670     162 NVPINHIDRLRGEGNATVQRLRDAADSRIIIGENGRVWIDGNAE-GTAWAREAVALTQASGHKTTFEAELSALEQNAPKK 240
AFH43325     154 DIAQHAVNSLINRKRALVEAIVKETKTEILISNNGRVWIKGTDSILEDLAVLAIKKLESVDLYSITSSEIINFIQIEKQK 233
AFU59312     145 KISATRVPRLIGKRGSMIQTIEQATQTRVLIGQNGIVVVTGRTPEGIKLAVRAIKMVEEEAHTANLTQRIKVLLNVPDTP 224
ALI34950     148 KISPTRVPRLIGKRGSMIQTIEQATQTRVIIGQNGIVVVTGRDPDGLSLAAKAIKMVEEESHTTNLTQRVKTLLNVQDPV 227
CUR51151     148 EISPSKVPRLIGKRGSMIQTIEMATKAIITIGQNGWIVISCEDSEGLLKAVEAVKMIDALAHTPNLTERVKSMLGVVDGE 227
WP_084790522 148 KISATRVPRLIGKRGSMIQTIEQATQTRVLIGQNGIVVVTGRSPEGIEQAVKAIRMVEDEAHTSNLTQRIKVLLNVPDTP 227
WP_048104768 148 KISPNKVPRLIGKRGSMIQLIESSTNSQVTIGQNGLLVVSSEDSNGLLKAIQAIELIEEQAHVANLTDQVNEMLESKSE- 226
WP_103287607 148 KINPTKVPRLIGKRGSMIQMIEQLTRCRILVGQNGVLVVTGANKDAMHVAVKAIRMVEEGAHTANLTERVKEMLQgvqvg 227
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