Conserved Protein Domain Family
PRK05602

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PRK05602: PRK05602 
RNA polymerase sigma factor; Reviewed
Statistics
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PSSM-Id: 235530
Aligned: 25 rows
Threshold Bit Score: 201.034
Created: 9-Dec-2010
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
70731405    1 MNETDPDLELLKRIGNNDAQAVKEMVTRKLPRLLALASRLLGDADEARDIAQESFLRIWKQAASWRSE-QARFDTWLHRV 79 
148261322  26 DPDGDPDADLLARIGMGEEAAFRTLMAHKLPRVHGLALRLLRDSALADDVAQEVFLRVWRQARAWRPG-AARFDTWLHRV 104
39937508   59 SIEHDSDEVLMLAVAERRQQAFRVLMARHMPRAIRLAQRIVRDPAEADDIGQEAFLRVWNKASSFDPK-IARFSTWLYRI 137
86751382   54 LMDDDSDEALMAAVVARRQQAFRVLMNRHMPRAIRVAQRVVRDPAEADDIGQEAFLRVWNKASSFDPQ-IARFTTWLYRI 132
192293299  64 SIEHDNDEVLMLAVAERRQQAFRVLMARHMPRAIRLAQRIVRDPAEADDIGQEAFLRVWNKASSFDPK-IARFSTWLYRI 142
83311915   33 EMDAASDDDLLRAIAQGDRRSFQRLMERHVRAMLALSTRVLRNPDDADEIVQEAFLKVWTLASGWQSDrEAKFSTWLYRV 112
13474550    4 PMSADPDEELVRRVGAGDPAAVQTLVARKLPRILSLAVRMLGDAAEAEDVAQETFVRIWRHAASWRRG-NARFDSWIHRV 82 
87198570   26 HREALHDAALMSEVARGSVEAFSVLVDRHSPALYRVAMRMLSDGAEAEDVVQDCFTRLWQNAPRWKPS-GAGLVGWLHRV 104
222106326   1 -MTDDPDEELVRQVATGDQAAMRTMVARKLPRFLALANRMLADPAEAEDVAQETFLRIWKHAGGWRQG-RARFDTWAHRV 78 
222082982   7 PKNGDPDEDLLGRVAAGDVKATRALISRQLPRILAVATRMLGDANEAEDVAQETFLRVWRNAGGWRQR-NARFSTWIHRV 85 
70731405   80 ALNLCYDRLRRRKEHvpvDSEHACEALDTRPAPDEQLEAS-AQSRRMAQALDQLPDRQREAIVLQYYQELSNTEAAALMQ 158
148261322 105 ALNLCLDRLRRRREV---AVAEPPDQVDPAPGADFMLARD-AEARRVERAVAALPARQREALVMQVYQGLSNIEAAAALG 180
39937508  138 VLNLSFDRTRKPRHA---PIEDAAEVPSADPAPVEALITA-QQQRLLEAALAELPERQRGAIALFHMEGLSGEEAARAMN 213
86751382  133 VLNLAFDRARKPQLA---PIEEAAEIESGEAGPVETIIAA-QQRRLLERAMAALPERQRGAVALFHMEGLSGEDAARAMN 208
192293299 143 VLNLSFDRTRKPRHA---PIEDAAEVPSADPAPVEALITA-QQQRLLEAALAELPERQRGAIALFHMEGLSGEEAARAMN 218
83311915  113 VLNASLDRLRRARFV---AEEEADEPVDPAPGGLDRVVAR-QRERLVSTAMAEMPARQREALSLYYFSDLTAPEAARVLD 188
13474550   83 TLNLCYDRLRRRREQ---VTDDLPDMADPSPLPDAR-----EEPHRVEQALQAIAPRQREAIILVYYQEMSNIEAAATLE 154
87198570  105 TMNLCFDRKRRFRVV---TVETLPDPADDSPLPDRRIEAD-QAARGVADALADLPERYRAALVLCYYEGFTNALAAEVLD 180
222106326  79 AINLCYDRLRKRRDV---LMAEPPDRMDDAPLPDAGLTGGeADSQRVNAALQALAPRQREAIVLVYYQDMSNLEAASVMQ 155
222082982  86 TINLCYDRLRRRKHV---IAEDPPDVPYEGPAPDAGMLSEdDPGKRVEWAMQMIAPRQREAIILVYYQAMSNAEAAAIME 162
70731405  159 ISVEALESLLSRARRNLRSHLAEAPGA 185
148261322 181 ISVEALESLLARARRALRQQLEDLRP- 206
39937508  214 LSPKAFESLLGRARLTLKKAVEKRQDD 240
86751382  209 LSPKAFESLLARGRAALRKEVERLEGH 235
192293299 219 LSPKAFESLLGRARLTLKKAVEKRQDD 245
83311915  189 LSLSAMEALLVRGKRSLRTALARLGIR 215
13474550  155 ISVDALESLLSRGRRALQMILARDGVH 181
87198570  181 LNIKAMESLLFRARRQMRGLLEARDIS 207
222106326 156 ISVDALESLLARGRRSLQKTLTAEGLT 182
222082982 163 ISVDALESLLARGRRSLQTLLLKERID 189
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