1DCJ,1JDQ,1JE3,1PAV


Conserved Protein Domain Family
SirA_YedF_YeeD

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cd00291: SirA_YedF_YeeD 
Click on image for an interactive view with Cn3D
SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Statistics
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PSSM-Id: 238180
Aligned: 192 rows
Threshold Bit Score: 43.6974
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
CPxP motif
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:CPxP motif
Evidence:
  • Comment:These conserved residues serve to stabilize the first helix and are possibly involved in mRNA binding.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        ##  #  #### #                                                        
1DCJ_A       11 TLDALGLRCPEPvMMVRKTvrnmqpGETLLIIADdpattrDIPGFCTFMEHel-vAKETDglpYRYLIRK 79  Escherichia coli
NP_578422     2 ILDVRGLKPPQPtLMILENlgklkiGETLEVLGDkp--fvDIIPKLEEAGYq--vELNKVgefFVLKVTK 67  Pyrococcus furiosus DSM 3638
AAS12983      5 IVDARGLACPEPvVLTKKAla---vNSAFVVLVDnetskeNIKRFCDNAKAkt-kIEPSDd-gWKIAVSK 69  Treponema denticola ATCC 3...
BAD75040      2 ILDNRGLEPPQPmMRTLAAlaklnqGETLTIINDrr--pmFLYEQLDELGYrh-eTVAREdgsFEIRITK 68  Geobacillus kaustophilus H...
ZP_00663673   3 KVDVRGLSCPMPvIKTKKIld--qgVKELLVIGTssvskeNVSKLARSSGYqv-tMKVDAkneWEMELRK 69  Syntrophomonas wolfei str....
ZP_00667796   9 IVDARGLSCPQPvLLVMSKike-kaSGEIEVIVDnevsreNVSRAARAKGWev-rEERRQgdeWHLILGQ 76  Syntrophobacter fumaroxida...
AAZ45753      9 VVDARYMEPPEPfVATMEMldtlkeGEKMLLLLFre--phPLYKVLRQNGHdyevEQVADg-tFEILISR 75  Dechloromonas aromatica RCB
ABA88078     11 TVDARGLSCPQPvLMTLNAika-gnDSEIKVLVDsevskeNVCRAANNRGWtvadITDESg-eFSITMKK 78  Pelobacter carbinolicus DS...
ZP_00800280   4 IVDARGRSCPEPvVMTKQAven-ysGETIQVLVDaivaveNIKRFASNQGFkv-nVLENDe-dYEILIEK 70  Alkaliphilus metalliredige...
ABB31325      3 IIDCRNMACPAPvVTTKRAlee-agGETVQVLVDpgapreNVIRFAENRGFav-sEVEADn-gFALTITS 69  Geobacter metallireducens ...

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