3FBR,4PU5,4PU3


Conserved Protein Domain Family
HipA

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cd17793: HipA 
Click on image for an interactive view with Cn3D
type II toxin-antitoxin sytem toxin HipA and similar proteins
This family contains type II toxin-antitoxin (TA) system HipA family toxins similar to Escherichia coli and Shewanella oneidensis HipA, which is a serine/threonine-protein kinase that phosphorylates Glu-tRNA-ligase (GltX), preventing it from being charged, leading to an increase in uncharged tRNA(Glu). This induces amino acid starvation and the stringent response via RelA/SpoT and increased (p)ppGpp levels, which inhibits replication, transcription, translation and cell wall synthesis, reducing growth and leading to persistence and multidrug resistance. HipA is the toxin component of the HipA-HipB TA module that is a major factor in persistence and bioflim formation; its toxic effect is neutralized by its cognate antitoxin HipB. HipA, with HipB, acts as a a corepressor for transcription of the hipBA promoter. Structures of HipAB:DNA complexes from both Escherichia coli and Shewanella oneidensis reveal distinct complex assembly.
Statistics
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PSSM-Id: 341492
Aligned: 51 rows
Threshold Bit Score: 357.674
Created: 28-Jul-2017
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
ATP bindingautophosphory..
Conserved site includes 23 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Structure:3FBR: Escherichia coli HipA binds AMP-PCP; contacts at 4A
  • Structure:4PU5: Shewanella oneidensis HipA binds AMP-PNP and two magnesium ions; contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
3FBR_A        19 LANGAHTFKYAPEWlasrYARPLSLSLPlqrgniTSDAVFNFFDNLLPDspiVRDRIVKRYhaksrQPFDLLSEIGRDSV 98  Escherichia col...
4PU5_A        45 ATADTFAVHYTKDWq--qSGFPLSPTIPldg-tgTSNQISMFLVNLLPEn-kGLDYLIESLgvskgNTFALIRAIGLDTA 120 Shewanella onei...
4PU3_A        46 ATADTFAVHYTKDWq--qSGFPLSPTIPldg-tgTSNQISMFLVNLLPEn-kGLDYLIESLgvskgNTFALIRAIGLDTA 121 Shewanella onei...
WP_006720298  20 IAADGSTFTYDVAYlsnpHAAPLSASLPlraepfSPPQYRPYFEGLLAEg-iARQALAAELklredDWLAMLVACGRDCI 98  Collinsella ste...
WP_051432327  23 YEDYTLHFSYERAYgeleDALPLSLRMPlsqseyTDLACRAFFQNLLLEg-rRLDQVADREgldrdNVAGLLSHLGQECP 101 Rhodovibrio sal...
CCZ05904      23 ETWEDARFIYEKSYlenqSHQPVSISLPfqedafSPFETRCYFEGLLPEg-yTRRCVAGWMhvaeeDYLSVLAGLGNECL 101 Clostridium sp....
WP_025587717  24 LETKALTFRYSEDFa--aTGQSISLSLPagiepvGDPLTRAFFDNLLPEndqIRRVIEREGld-raDIVDILAHVGGDCP 100 Sphingomonas sp...
OJU58745      26 GDEGDLSFTYNAQWlanpNGHALSLSLPlgeepfGDVPVRAWFGNLLHEn-dQLEATMARYgiersDIAGLLEHLGADCP 104 Altererythrobac...
OHC93108      21 SDAGDLGFTYAADYlareGAHPISLSLPlaersyDERVSRAFFQNLLPEn-nQLDQVVVRErlersDIAGILYHLGADLS 99  Sphingomonadale...
NP_421532     24 DEARAISFAYDDRYia-aGGPPLSLSMPleqvsfGDVTARAFFDNLLPEn-dQMQRVMDREglardDIVGLLSHLGADCS 101 Caulobacter cre...
Feature 1                                                             ##### #                    
3FBR_A        99 GAVTLIPEDetvthpimawekltearlee-vltaykadiplgmireendFRISVAGAQeKTALLRi-----GNDWCIPKG 172 Escherichia col...
4PU5_A       121 GAIAFVPKGallpetqlrpikaeevi------qriedptmwpmeiwdgkPRLSVAGVQpKLNLFYn-----GKEFAFAEG 189 Shewanella onei...
4PU3_A       122 GAIAFVPKGallpetqlrpikaeevi------qriedptmwpmeiwdgkPRLXVAGVQpKLNLFYn-----GKEFAFAEG 190 Shewanella onei...
WP_006720298  99 GDIVIADEYapmpvdagyvsvtqaei-------mhmleslpqiaehnadRRLSLAGAQgKTGLAHrpdctmETGWLSPRG 171 Collinsella ste...
WP_051432327 102 GAISIVPEGnppgkqpgiipddyreiea--nelaaevramhegkpprrnRRISLAGVQgKLAVTVg----eDGRLYETAE 175 Rhodovibrio sal...
CCZ05904     102 GAVRICEPGaggcspsykkisreell-------efakegasksaqflakAHLSLTGASgKTGLYYd----nKDGWYMPFG 170 Clostridium sp....
WP_025587717 101 GAISCLPLEappikvpgdlaedyrpldaeelalivqrladrqslpedivDPSPVAGVQsKLPLTIl----pDGRFALPAS 176 Sphingomonas sp...
OJU58745     105 GAVSVLGLDqppvkrpgtlsedydpldegmlreiverlatgkplpdemrDPSPVAGVRrKVSLAAl----pDGRFALPKH 180 Altererythrobac...
OHC93108     100 GALSCLPAGadrikipgvldrdydaidndqladivrrlgnnqplpdelrDPSPVSGYQrKVALTLl----pDNRYAIPKP 175 Sphingomonadale...
NP_421532    102 GAISCLPIGadpikvpgvlsedyellapgaiaeiarslaerqrlpdtitDPSPVAGVQrKIALTHt-----PQGFAKPRP 176 Caulobacter cre...
Feature 1                # #                                       #                #####        
3FBR_A       173 --ITPTTHIIKLPIgeirqpnatldlsqSVDNEYYCLLLAKELGl---nVPDAEIIkag--nvRALAVERFDRRWnae-- 243 Escherichia col...
4PU5_A       190 --TLSSTHIVKFEKyh-----------hLVINEFITMRLAKVLGm---nVANVDIVhfg--ryKALCVERFDRRNipg-- 249 Shewanella onei...
4PU3_A       191 --TLSSTHIVKFEKyh-----------hLVINEFITMRLAKVLGm---nVANVDIVhfg--ryKALCVERFDRRNipg-- 250 Shewanella onei...
WP_006720298 172 --LAATTHMLKTSSmr-----------dVPENEFLCMQAARACGl---nVAKVSLLsy---atPVLVVERFDRRIvear- 231 Collinsella ste...
WP_051432327 176 gvGAPTTHVLKVGDpdy---------haLVENEYICLKLARRLGl---dAAHATIGyad--dvPYLLVERFDRYRdsn-- 239 Rhodovibrio sal...
CCZ05904     171 --TAPSTHIVKQSHvrl---------sgIVANEQLCLRTAKILGi---dVPESFIIsvgtgehILFATKRFDRLMqedsr 236 Clostridium sp....
WP_025587717 177 drKVPTTHILKVPRrae---------avEALQEEAACNLAQACGf---dVSNSRHIkve--gvDALLIERFDRFVid--- 239 Sphingomonas sp...
OJU58745     181 gtGAPTTHILKLPDrqn---------pkEARDEAFLTDLAAKCGfsvgtCVADQIGg-----hEILLINRFDRLIdd--- 243 Altererythrobac...
OHC93108     176 gsGAPTTHILKVPEstf---------prEAFYEAVCAGLADYAGld--tAPSRSFWid---qyEVILATRYDRVVkd--- 238 Sphingomonadale...
NP_421532    177 grKVPTTHILKVPEtrl---------rrDARLEAAAARLASALGld-vsIPEAIVIdg----vDALLITRFDRVVrd--- 239 Caulobacter cre...
Feature 1                    #             #                                                     
3FBR_A       244 ----rtvLLRLPQEDMCQTFGlpsSVKYes-----------dgGPGIARIMAFLm-gSSEALKDRYDFMKFQVFQWLIGA 307 Escherichia col...
4PU5_A       250 ----eqrVLRRHIVDSCQALGfsvSKKYernfgtgrdvkdireGVSFNRLFSLAa-kCRNPVAAKQDMLQWALFNLLTGN 324 Shewanella onei...
4PU3_A       251 ----eqrVLRRHIVDSCQALGfsvSKKYernfgtgrdvkdireGVSFNRLFSLAa-kCRNPVAAKQDMLQWALFNLLTGN 325 Shewanella onei...
WP_006720298 232 ---egwhVERLHQEDFCQAFRmlpGSKYae-----------leGGSVRRIASFLrerSARPVREIMAFAQQLLFSYVIGN 297 Collinsella ste...
WP_051432327 240 -----gyIHRRHQEDTCQALGlpgTLKYeehg-------hgdrRATLDGIFDLLg-eTVSPIEARQAMISITVFNYLIAN 306 Rhodovibrio sal...
CCZ05904     237 vidgkkvPFRLQQEDFAQALGvpaSQKYek-----------igDSYLKRVFTLLrqySDNPVEDQLKLWDICIFNYLIGN 305 Clostridium sp....
WP_025587717 240 -----gtVYRLHQEDFAQALGlpaSLKYerkg-------iegrKFDTAAARSVLd-rLSSPARARETFVLATLFNLAIGN 306 Sphingomonas sp...
OJU58745     244 -----ekVYRLHVEDFAQASGlpsDLKYerrg-------eagrRFDAATIGRILa-aTDQPALARDTFLRMTLFNLLLGN 310 Altererythrobac...
OHC93108     239 -----gmIYRRHQEDFAQALGlppRLKYereg-------rkgyRYDTAAIATVLn-rTASPAQSRDAFLRATIFNLAIGN 305 Sphingomonadale...
NP_421532    240 -----gvVYRLHQEDFAQAMGlpaTLKYqrng-------apgrQFDAQAIARVLd-qTEAPALSRTAFLSATIFNLLIGN 306 Caulobacter cre...
Feature 1         # # ## #                   ##                                                  
3FBR_A       308 TQGHAKNFSVFIqag-----gsyRLTPFYDIiSAFPVLggtgihiSDLKLAMGLNAskgkkTAIDKIYpRHFLATAKVLR 382 Escherichia col...
4PU5_A       325 ADAHGKNYSFFMtps------gmEPTPWYDLvSVDMYEd------FEQQLAMAIDDe----FDPNSIYaYQLAAFMDGLG 388 Shewanella onei...
4PU3_A       326 ADAHGKNYSFFMtps------gmEPTPWYDLvSVDMYEd------FEQQLAMAIDDe----FDPNSIYaYQLAAFMDGLG 389 Shewanella onei...
WP_006720298 298 CDAHLKNYSLLYresnggqsvsfELSPAYDLvCTTLYPk------YSRDLAMDLGGa----RSIDEVTpETLENLARELG 367 Collinsella ste...
WP_051432327 307 FDAHAKNFALLYqgr------rpHLAPFYDIvSTGVYPd------TSKSFALSIGGk----QDYDEIGgNEWGAFLNESG 370 Rhodovibrio sal...
CCZ05904     306 TDNHIKNIGLLYgkdr----rtiRLAPAYDIvSTMIYEe------STEQMAMAIDGe----LDIRKITkESFRAEARHIG 371 Clostridium sp....
WP_025587717 307 TDNHAKNFAILYglr-----gerLLAPLYDLlPIRLHGr------YTHEFAYNLGGa----SHFDEMTrAQMEAFLAEFG 371 Sphingomonas sp...
OJU58745     311 NDNHAKNNGLILasg-----gsvQLTPFYDLtPVLTGGd------YTDELAFNVGAa----NRFDNVTaDDLIALCAAIG 375 Altererythrobac...
OHC93108     306 TDNHAKNHALLYdag-----adpRLAPLYDLvPITLSDa------HNHILSFAIGKa----DHPDTVRpDDLAALLAQFQ 370 Sphingomonadale...
NP_421532    307 TDNHAKNHGLLYrqg-----rapILAPLYDLlPSRMNLd------FNDQLSFNIGAa----DHPDAITfDDMMAFFEVFG 371 Caulobacter cre...
Feature 1                                                                         
3FBR_A       383 FPev-----qmHEILSDFARMIPAALDNVKTSLpt-------dfPENVVTAVESNVLRLHGRLSR 435 Escherichia coli K-12
4PU5_A       389 LPrn-----llISNLTRIARRIPQAIAEVILMLppl-----dedEASFVAHYKTQLLARCERYLG 443 Shewanella oneidensis MR-1
4PU3_A       390 LPrn-----llISNLTRIARRIPQAIAEVILMLppl-----dedEASFVAHYKTQLLARCERYLG 444 Shewanella oneidensis MR-1
WP_006720298 368 IK---------DHALRRIAKKIAATLVGALDRAgsgdadpvlesTPYVADDLIADIEPRLEVLRA 423 Collinsella stercoris
WP_051432327 371 IRtngaqkrvlNRTIKPLVEGVLPELDTLLEEEn----------LEHRGRRIRNLVGAGIRNLND 425 Rhodovibrio salinarum
CCZ05904     372 LGer-----iaMRRFEQMQNSFERALAQAKEEIqd--------aGYPGVEEIYEKILRKNQPNHH 423 Clostridium sp. CAG:127
WP_025587717 372 LEga-----rtRRFIDGPVREMLAVVEQQAPLLrk--------iGQRFFDDLIGRELTRLVELLD 423 Sphingomonas sp. UNC305MFCol5.2
OJU58745     376 IPas-----gaQALLRSAAGELIDQLEELSASFp---------rEMSALDRLFGNTATHMNDILD 426 Altererythrobacter sp. 66-12
OHC93108     371 LVg--------PAARRFIEQRLIPVIAPLAQSRd---------vEGDWAKRFDAELTKRSARLLD 418 Sphingomonadales bacterium RIF...
NP_421532    372 MRra-----aaARFIENVIKPMIEALERATLGL-----------AGERLKDMDDLIGRETEQLVE 420 Caulobacter crescentus CB15

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