Conserved Protein Domain Family
SAM_YgiQ

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TIGR03904: SAM_YgiQ 
uncharacterized radical SAM protein YgiQ
Members of this family are fairly widespread uncharacterized radical SAM family proteins, many of which are designated YgiQ. [Unknown function, Enzymes of unknown specificity]
Statistics
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PSSM-Id: 274847
Aligned: 68 rows
Threshold Bit Score: 891.071
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EDS02644            2 FLPTTLKEVRARGWDQLDVILFTGDAYIDHPSFGAAVVGRLLEAEGYRVAIVPQPNWrDDLRDFTKLGTPRLFFGVTAGA 81  Alistipes ...
EDV70435           13 FLPISLSEAKARGWNELDVIFVTGDAYVDHPSFGVPLLARLLESKGLRVGIIPQPDW-RSKEPFMALGRPRLFFAVAAGA 91  Geobacter ...
REF_jgi:Pcar_1897  17 FLPTNRQEMLARGWDELDILFVSGDAYIDHPAFGVPLLARFMAHYGYRVGILAQPDW-RQPQAFSVMGRPRLFAAVSAGA 95  Pelobacter...
WP_011734500        3 FIPTTRSEMHRRGWEQLDVIFVNGDAYVDHPAFGVPLLARWLEKHGFRVGVIAQPDW-RSVEPFMALGRPRLFFAASAGA 81  Pelobacter...
WP_012241248       20 FLPTTREEMRARGWDALDILLVNGDAYVDHPAFGAAIIGRFLEGRGFRVGVVSQPRY-QDTSDLLRMGVPRLMVGVTAGN 98  Sorangium ...
WP_012471217        4 HLPITLDEARGRGWHELDIILVTGDAYIDHPAFGVPLLGRWLEAHGFRVGIIAQPDW-RSKEAFMALGRPRLFFGVSAGA 82  Geobacter ...
WP_011984394       35 FLPTSAAELRARGWSALDVLLVTGDAYVDHPSFGAAVIGRVLEAQGYKVGIVAQPDW-RSTADVLRMGRPRLFVGVTSGA 113 Anaeromyxo...
WP_011218042       22 FLPTTRKEMDALGWDSCDIIIVTGDAYVDHPSFGMAVIGRLLESQGFRVGIISQPKW-DNKDAFMELGQPNLFFGLTAGN 100 Photobacte...
WP_011813902       25 FLPMSRREMGELGWDSCDVILVTGDAYVDHPSFGMAIIGRLLEAQGFRVGIIAQPDW-RNTSDFQALGAPNLFFGVTAGN 103 Halorhodos...
WP_011385473       17 FLPMSRAEMETLGWDQCDVVLVTGDAYVDHPSFGMAIVGRLLESQGFKVGIIAQPDW-SGPEPFRALGRPRLFFGVTAGN 95  Magnetospi...
EDS02644           82 MDSMVNHYTANIRLRSNDAYTPGGKAGFRPDYAVKTYTQILKRLFP-RTPVVIGGIEASLRRLTHYDYWSDSLHPSILAD 160 Alistipes ...
EDV70435           92 MDSMVAHYTPARKLRRDDAYTPGNRHGARPNRATIVYTSRLKEAYR-DVPVVIGGIEASLRRFAHYDFWEDKVRRSALLD 170 Geobacter ...
REF_jgi:Pcar_1897  96 MDSMVNHYTAARKLRRNDAYTPGGKAGARPNRAVIAYTAALKGVFK-GVPVVVGGIEASLRRLAHFDYWTEQVRRSVLVD 174 Pelobacter...
WP_011734500       82 MDSMVAHYTPARKLRHDDAYTPGNRHGARPNRATLIYTSRLKEAFR-DVPVVIGGIEASLRRFAHYDYWENRVRRSLLFD 160 Pelobacter...
WP_012241248       99 LDSMLNKLTAQKKVRSEDQYSPGGQVGLRPNRASIVYANLCRQAFP-GVPIVLGGIEASLRRIAHYDYWSDQVRRSVLLD 177 Sorangium ...
WP_012471217       83 MDSMVAHYTPRKKLRHDDAYTPGGKHGARPNRAALIYTSRLKEAYR-DVPVVLGGNEASLRRLAHYDYWDDKVRRSILLD 161 Geobacter ...
WP_011984394      114 MDSMVNHYTAHKRRRSDDAYTPDAVAGKRPDRATTAYARLCRQAFGaTTPIVVGGIEASLRRIAHYDYWDDRVLPSVLVP 193 Anaeromyxo...
WP_011218042      101 MDSMINRYTADRKLRHDDAYTPNNEGGKRPDRAVLVYSQRCREAYK-ETPIVLGGIEASLRRLTHYDYWSDKVRRSVIVD 179 Photobacte...
WP_011813902      104 MDSMVNRYTADGRRRSNDAYSPDDEGGRRPDRATIVYSQRLREAYR-DTPILLGGIEASLRRLAHYDYWSDKVRRSVLLD 182 Halorhodos...
WP_011385473       96 MDSMVNRYTSDRRLRSDDSYTPGGEGGKRPDRAVIVYAQRCREAFK-DVPVVLGGIEASLRRIAHFDIWSEKLRRSVLLD 174 Magnetospi...
EDS02644          161 SGADLLIYGMGERVIQQVARAMNNGFNAKLLRNIRQVGF-MADRsyverLD------P---------TR----------- 213 Alistipes ...
EDV70435          171 AKADLLVYGMGETPLLELVRRLQKGEAFASIRELRGTAY-IAAT-----PP------D---------TEg---------- 219 Geobacter ...
REF_jgi:Pcar_1897 175 AKADLLIYGMAENTLLELARRCCAGESPAQIMNLPGTAV-VCPD-----IP------P---------G------------ 221 Pelobacter...
WP_011734500      161 AKADLLLYGMAERSMLELAQRMGRGESLADIRGLRGTCW-VEKA-----GH------H---------LTd---------- 209 Pelobacter...
WP_012241248      178 AKADMLIFGMGEKAVWEVADRLRRGEPVRAIRDVRGTAVpLRKG-----EW------EhiegsryvaDGk---------- 236 Sorangium ...
WP_012471217      162 AKADLLVYGMAEQSLLELARRMKAGEALEQIRDLRGTAF-ITRQ-----PP------Ed--------------------- 208 Geobacter ...
WP_011984394      194 SGADLLVYGQGEKPVLEIARRLASGEDLCGLVDVPGTAL-AVPD-----LAlamlegR---------ERk---------- 248 Anaeromyxo...
WP_011218042      180 AKADILLFGNAERALVEVAHRIAKGEQLEDMKNIAGTAV-IIKE-----VP------E---------RFreidssriekp 238 Photobacte...
WP_011813902      183 AKADLLLYGNAERALVEAAHRIAGGEPAREIHDVRGIAY-ARTApgadePD------P---------ARae--------- 237 Halorhodos...
WP_011385473      175 AKADLLVFGNAERAIVDIARRSAAGEAPREMHDIRGTVF-VRPG-----VP------E---------DWrvvdasdlet- 232 Magnetospi...
EDS02644          214 ---------------------------------------------TIRLHSYEECVADKRAFGKNFTRIETLSNLMEPDE 248 Alistipes ...
EDV70435          220 ---------------------------------------------WLELPSFEAVASDKGAYGESFRLLSGEQNPACAKV 254 Geobacter ...
REF_jgi:Pcar_1897 222 ---------------------------------------------ALELPSYEAVSNDPEAFGRAFRLAAEEGNPYSGRA 256 Pelobacter...
WP_011734500      210 ---------------------------------------------HLEIPCFEECGSDRLKFAEAFRLASREQNPYNGRT 244 Pelobacter...
WP_012241248      237 ---------------------------------------------AVILPSYEEVAADKGAFAEMSRAFQFETNPGNARP 271 Sorangium ...
WP_012471217      209 ---------------------------------------------AVLLPSFEQVGSSKETYLEAFRQAEHEQNPYCAKA 243 Geobacter ...
WP_011984394      249 ---------------------------------------------TLELPAYEEIALDRRRFAEFSRLYHLEHNAENARI 283 Anaeromyxo...
WP_011218042      239 gkampminpyateeecktkqedevkvepvakpvvvtasrhdpkntYIRLPSYEKLCNDRILYAHASRVMHLEANPYSSRA 318 Photobacte...
WP_011813902      238 --------------------------------------------gVLRVPDWEQVRQDADRFAELARITRQETNPHNART 273 Halorhodos...
WP_011385473      233 -----------------------------------appalkgdkvVVRLPSFEQVQDDPVLYAQASRVLHQESNPLNARP 277 Magnetospi...
EDS02644          249 tLVEGVGD----RYAVITPPNATLTTEELDHSFDLPYERAPHPRYRGRgDIPAWEMIKHSVNIHRGCFGGCSFCTISAHQ 324 Alistipes ...
EDV70435          255 -VVQRHAE----RFLVCNPPAWPLSEPALDAIYALPFAKAPHPSYKEA--VPAYEQIRNSITTHRGCFGGCAFCAITHHQ 327 Geobacter ...
REF_jgi:Pcar_1897 257 -VAQRHGN----RWVLVNPPSLPLSQTELDGIYALPFSRKPHPGYRES--IPAFEQIRFSVTSHRGCCGGCAFCAIASHQ 329 Pelobacter...
WP_011734500      245 -IVQRHGD----RLLVCAPPSLPLEEAEMDSLYALPFEKAPHPSYGE--TIPAWEQIRCSITSHRGCFGGCSFCAIAMHQ 317 Pelobacter...
WP_012241248      272 -LLQAHGA----EAVYFNPPAFPLETGQMDALYDLPFTRVPHWSYDAP--IPAYETVKHSVVTMRGCFGGCTFCSITEHE 344 Sorangium ...
WP_012471217      244 -LVQGHAE----RLVVCNPPALPLVTAELDAVYALPFSREPHPSYRE--TIPAFEQIKTSLTSHRGCYGGCSFCAISSHQ 316 Geobacter ...
WP_011984394      284 -LVQRHGRgeraRFVVVNEPMAAPSTEELDRIAELPYVREAHPSYGGA-HIPALEQIRWSIQILRGCAAGCAFCCITEHQ 361 Anaeromyxo...
WP_011218042      319 -LAQKHGD----RELWVNTPPIPLTTEEMDFVFGLPYARVPHPSYGKE-KIPAYEMIKTSVNIMRGCFGGCSFCSITEHE 392 Photobacte...
WP_011813902      274 -LVQAHGA----QEVWITPPPLPLSTEELDALYELPYARAPHPAYAGR-PIPAWEMIRFSVNIMRGCFGGCSFCSITEHE 347 Halorhodos...
WP_011385473      278 -LVQRHGD----RELWVTEPPIPLSTPELDGVYDLPYARGPHPSYGEA-KIPAWEMIRFSINIVRGCFGGCSFCSITEHE 351 Magnetospi...
EDS02644          325 GKFITSRSEKSILREVERVT-RMPDFRGYLSDIGAPSANMYRMGGRDRELCSKCRRPSCLHPKMCPNLDNDHRPLLDLYA 403 Alistipes ...
EDV70435          328 GKTIQSRSEESVLRELERLA-ALPWFRGSVSDLGGPTANMFGLSCGNKEAGSNCRRESCLYPKLCGNLVTADARSSRLLA 406 Geobacter ...
REF_jgi:Pcar_1897 330 GKIIQSRSQASIVSEVTDMA-RDKGFRGTITDVGGPTANMYGMSCGNIKARKSCRRDGCLFPQPCRHLVIEDQAAASLLE 408 Pelobacter...
WP_011734500      318 GKLIQSRGQSSVESEIRELV-RKPWFRGSISDIGGPTANMYGLSCGDSAAMKCCRRESCLFPKQCRHLIVDDRRAVRLLH 396 Pelobacter...
WP_012241248      345 GRVIQSRSADSILREVRALR-RMDGFRGVLSDLGGPTANMYQMRCKDEAIENACRRLSCVFPEVCENLNTDHGPLLKLMK 423 Sorangium ...
WP_012471217      317 GKFIQSRSMASVSAELQLLV-KKPWFRGTISDLGGPTANMYGTGCGAPDGGHRCRRPSCLHPRPCPSLKADDRSAVQLLG 395 Geobacter ...
WP_011984394      362 GRDIASRSEASVLRELATLA-SKESFKGTITDVGGATANMWGMRCTDAEAHAVCRRASCVYPTVCKFFAVDHGPLVDLYE 440 Anaeromyxo...
WP_011218042      393 GRIIQNRSQESIIDELKDIRdKVPGFTGTISDLGGPTANMYRLGCSDPKAEINCRRPSCIFPKICEKLNTDHRHTIDLYR 472 Photobacte...
WP_011813902      348 GRLIQSRSQESVLREIDEIAeRTEGFTGVISDLGGPSANMYRMGCKDPKAEAHCRRMSCLYPRVCRNLDTDHEPLINLYR 427 Halorhodos...
WP_011385473      352 GRIIQSRSADSIIHEIEEIRdKTKGFTGTISDLGGPTANMWRLGCREPEVQKVCRRLSCVYPDICKTLGTDHDPLIRLYR 431 Magnetospi...
EDS02644          404 KVRAVKGVKKAFIGSGIRYDLFDGSd-----YLDTVIRHHTSGRLKVAPEHTEDAVLKLMRKPPFVMFERLNADFNRICR 478 Alistipes ...
EDV70435          407 KARKVSGVRNVAVSSGVRYDLLERQp----nYLRELVSHHVSGLLKVAPEHLIDRVTSAMRKPGKACFERFRDSFMKESA 482 Geobacter ...
REF_jgi:Pcar_1897 409 KVRRLPGVKHVFVASGIRLDLLERQp----aYFQQLLKHHVGGLLKVAPETLSDKVARIMRKPGAALFNRFLKQFRAYSR 484 Pelobacter...
WP_011734500      397 AARDFAGVRHVAVSSGVRYDLLERQp----aYCRELIAHHVGGLLKVAPEHLVERVTMLMRKPGLAVFERFLSRFREESR 472 Pelobacter...
WP_012241248      424 AVREEQGIKKVFIASGVRYDLAERSp----eFIEELATHHTGGQLSVAPEHNKKDVLDKMKKPGIESYERFAEQFRCASE 499 Sorangium ...
WP_012471217      396 KASGSAGVRTLTVTSGIRNDLLELQp----dYCKTLIEQHVGGLLKVAPEHLVDQVTMLMRKPGKAAFIRFLERFRDESR 471 Geobacter ...
WP_011984394      441 KARKVKGVKHLFVGSGVRYDLAQADtkngarYLKTLVQHHVSGQLKVAPEHVCEPVLKLMKKPGVSSFERLRKDFERYSR 520 Anaeromyxo...
WP_011218042      473 EARKVDGIKKVLIASGVRYDLAVESp----eYVRELVTHHVGGYLKIAPEHTEKGTLDLMMKPGMGTYDRFKNMFEKYSK 548 Photobacte...
WP_011813902      428 QARQRPAVKKVLVASGVRYDLAIHSk----aYVRELVSHHVGGYLKIAPEHTEPGPLAQMLKPGMDTYERFKALFEDYSR 503 Halorhodos...
WP_011385473      432 AARGVKGVKRVNIGSGVRYDLAVTSp----aYVDELVRHHVGGYLKIAPEHTEDGPLSKMMKPGIGSYERFKDMFEKAAV 507 Magnetospi...
EDS02644          479 REGLPYQLIPYFISSHPGCTERDMRSLADKVlGKLHFDLEQVQDLTPTPMTFSSVMFYTGENP------YTGEKVYVARS 552 Alistipes ...
EDV70435          483 RVGKRQYIVPYFISGHPGCTLSDMVDLALML-KRWGMKVEQVQDFTPTPGTLSTCIYHTGVDP------YTGKKVYVAKS 555 Geobacter ...
REF_jgi:Pcar_1897 485 ALDKRQSVVPYLIAGHPGCTLGDMVDTALFL-KENGMRVEQVQEFTPTPGTLATCMYHTGVDP------YSDTPVAVARS 557 Pelobacter...
WP_011734500      473 RLGKPQGIVPYLISGHPGCSLADMLELALAL-QRLGLRVEQVQDFTPTPGTCATCMYYSGIDP------ETGEKLYVATS 545 Pelobacter...
WP_012241248      500 EAGKNQFLVPYFISGHPGSTLRDMVDLAIYL-KKSGMRPRQVQDFIPTPMSMAACMYHTGIDP------LTREPVYTAKD 572 Sorangium ...
WP_012471217      472 KAGKVQTVVPYLMSGHPGCRVDEMVLLLKEL-QRLKLKVEQVQEFTPTPGTAATCMYYTGMDP------DSGKPVFVART 544 Geobacter ...
WP_011984394      521 EAGKEQYLVPYFISSHPGSSLEQAAELMDYL-QDNRWKPQQVQDFMPTPMTLASDMYWSGYHP------MTGEPVHVTRD 593 Anaeromyxo...
WP_011218042      549 DAGKKQYLIPYFISAHPGSTNEDMLNLALWL-KKYEYECDQVQNFYPSPMCNATSMYHSETNPlkrvkyKKREELFVAKG 627 Photobacte...
WP_011813902      504 RAGKEQYLIPYFIAAHPGTTDEDMLELALWL-KRNGFRPNQVQAFLPTPMALATAMYHSGRDPlrpvgsDGGTPVRTARG 582 Halorhodos...
WP_011385473      508 KAGKKLYLIPYFIAAHPGTSDQDMLNLALWL-KKNGFRLDQVQTFLPTPMSLATAMYHSGRDPirp-vrRVGEEVFTAKG 585 Magnetospi...
EDS02644          553 QEEKRRQKSYFF 564 Alistipes putredinis DSM 17216
EDV70435          556 DREKGLQKSLLL 567 Geobacter sp. M21
REF_jgi:Pcar_1897 558 ARERRLQKALLL 569 Pelobacter carbinolicus DSM 2380
WP_011734500      546 DREKGLQKALLL 557 Pelobacter propionicus
WP_012241248      573 LREKKLQKALLL 584 Sorangium cellulosum
WP_012471217      545 DREKILQKSILL 556 Geobacter lovleyi
WP_011984394      594 MDEKRMQKALLR 605 Anaeromyxobacter sp. Fw109-5
WP_011218042      628 ERERRVHKALLR 639 Photobacterium profundum
WP_011813902      583 LRTRRLHKAFLR 594 Halorhodospira halophila
WP_011385473      586 LRQRRLHKAFLR 597 Magnetospirillum magneticum
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