3VMA


Conserved Protein Domain Family
PBP_1b

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TIGR02071: PBP_1b 
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penicillin-binding protein 1B
Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of a particular bifunctional transglycosylase/transpeptidase in E. coli and other Proteobacteria, designated penicillin-binding protein 1B. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]
Statistics
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PSSM-Id: 273952
Aligned: 8 rows
Threshold Bit Score: 1166.03
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3VMA_A        31 WLLLKLAIVFAVLIAIYGVYLDQKIRSRIDGKVWQLPAAVYGRMVNLEPDMTISKNEMVKLLEATQYRQVSKMTRPGEFT 110 Escherichia col...
P02919        67 WLLLKLAIVFAVLIAIYGVYLDQKIRSRIDGKVWQLPAAVYGRMVNLEPDMTISKNEMVKLLEATQYRQVSKMTRPGEFT 146 Escherichia col...
P57296         8 YFLIKVFFFVLILTLCYGLYLYVKINRFINGKVWNFPTSIYGRIVNLEPGNSYSQKEVLHLLKSTMYRKVDLVMLPGEYS 87  Buchnera aphidi...
P45345        23 GFLLKFSFTALVLTIFYGGYLDWQIRSKMDGQIWHLPAEVYSRLESVKIADNLAFDEVIQILLDNEYRQTTMVAAPGDFK 102 Haemophilus inf...
WP_011171753  77 GLLIKLFLIGAVALAIYGVYLDSQIRSRIDGKVWQLPAAVYGRMVNLEPGMSYSKKEMIALLEGMQYRQVSRMTRPGEFT 156 Yersinia pestis
Q9KUC0        34 SIGWKLALTLAAVLVFIGIYLDSMIKQRFEGQLFDLPTVVYARILTLEPGNGLSLQELRNELDVLNYRKVAQPRFPGEYA 113 Vibrio cholerae...
WP_031628122   6 swalklglvglvllAGFAIYLDAVVQEKFSGRRWTIPAKVYARPLELFNGLKLSREDFLRELDALGYRREPSVSGPGTVS 85  Pseudomonas
WP_010893404  29 ACGLAGLALAMGFLIPYTLYLNQQVTARFGELRWQIPTRVYARPLMLQPGMALDARTLKIELDAASYREDNHGELPGTYQ 108 Xylella fastidiosa
3VMA_A       111 VQANSIEMIRRPFDFPDSKEGQVRARLTFDGDHLATIVNMENNrQFGFFRLDPRLITMISSPNGEQRLFVPRSGFPDLLV 190 Escherichia col...
P02919       147 VQANSIEMIRRPFDFPDSKEGQVRARLTFDGDHLATIVNMENNrQFGFFRLDPRLITMISSPNGEQRLFVPRSGFPDLLV 226 Escherichia col...
P57296        88 IKNNTIEFIRRAFDFPDIREDEFHARLYFNKDTLVKIKNIDNNhDFSFFRLEPKLIAMLKSPEAKKRMFIPRNQYPEMLV 167 Buchnera aphidi...
P45345       103 LEDDSIVVLRRAFPFPDKAEPQRVLRLRFSHNKLSRIEDLVTVkTVDEFRLAPKLIAMLQSDN-EDRLAIPLQNYPRLLI 181 Haemophilus inf...
WP_011171753 157 VQNDSIDILRRPFDFPDGKEGQIRARLLFKNDRLAQIQNLDNQrDFGLFRLDPKLITMLQSPNGEQRLFVPRAGFPDLLV 236 Yersinia pestis
Q9KUC0       114 SSSSRIELIRRPFEFADGPEPDRRVMLTFDGSGLNKIESLEQKrELGYLRLEPKLMGMLEKDSPEQRLFLRRDQFPEVLV 193 Vibrio cholerae...
WP_031628122  86 VAASAVELNTRGFQFYEGAEPAQRVRVRFNGNYVSGLSQANGk-ELAVARLEPLLIGGLYPAHHEDRILVKLDQVPTYLI 164 Pseudomonas
WP_010893404 109 QQNGRFTVSSRGYVDVDGAIPASRLIITLNNNQVSALRNADTRkPIRRGRLDPARIATLYGQKQEERRLVRLEEVPQLLV 188 Xylella fastidiosa
3VMA_A       191 DTLLATEDRHFYEHDGISLYSIGRAVLANLTAGRTV-QGASTLTQQLVKN--LFLSSERSYWRKANEAYMALIMDARYSK 267 Escherichia col...
P02919       227 DTLLATEDRHFYEHDGISLYSIGRAVLANLTAGRTV-QGASTLTQQLVKN--LFLSSERSYWRKANEAYMALIMDARYSK 303 Escherichia col...
P57296       168 KTLLAIEDKYFYEHDGIHLSSIGRAFLVNLMAGRTI-QGGSTLTQQLIKN--LFLTNTRSILRKINEIYMALILDRFYTK 244 Buchnera aphidi...
P45345       182 DTLILTEDRRFYEHNGINPVGILRALIANIRAGQTV-QGGSTLTQQLVKN--LFLSRERTITRKANEALMSLVLDWRYDK 258 Haemophilus inf...
WP_011171753 237 DTLLATEDRHFYEHDGVSPYSIARAVVANLTAGKAV-QGGSTLTQQLVKN--LFLTNERSLVRKLNEAYMALLMDYRYSK 313 Yersinia pestis
Q9KUC0       194 DALLVTEDRDFYQHDGVSPLAIGRAMVVNLKAGRTV-QGGSTLTQQLAKN--IFLSSDRTLWRKLREAYMALIIDYRYSK 270 Vibrio cholerae...
WP_031628122 165 DTLVAVEDRDFWNHHGVSLKSVARAVWVNTTAGQLR-QGGSTLTQQLVKN--FFLSNERSLSRKINEAMMAVLLELHYDK 241 Pseudomonas
WP_010893404 189 TGLQVVEDRDFKHHHGIDITSILRAAWVMVRSGGGVrQGASTLTQQLARSglLGIGKEQTLQRKCNEILYALILEARYSK 268 Xylella fastidiosa
3VMA_A       268 DRILELYMNEVYLGQSGDNEIRGFPLASLYYFGRPVEELSLDQQALLVGMVKGASIYNPWRNPKLALERRNLVLRLLQQQ 347 Escherichia col...
P02919       304 DRILELYMNEVYLGQSGDNEIRGFPLASLYYFGRPVEELSLDQQALLVGMVKGASIYNPWRNPKLALERRNLVLRLLQQQ 383 Escherichia col...
P57296       245 DRILELYLNEVYLGQDGDEQIRGFPLASIYYFGRPINELNLEQYALLVGMVKGASLYSPWTNPNLALKRRNLVLFLLYKQ 324 Buchnera aphidi...
P45345       259 NRILETYLNEIYLGQNGDTQIHGFELASQFYFGRSIREISLDQIALLVGMVKGPSLYNPWRNPQNALERRNIVLRLMLEH 338 Haemophilus inf...
WP_011171753 314 DRILELYLNEVYLGQSGGDQIRGFPLGSLYYFGRPVDELSLDQQAMLVGMVKGASLYNPWRNPKLALERRNLVLRLLQNQ 393 Yersinia pestis
Q9KUC0       271 DRILEAYLNEVYLGQSGADAIHGFGLASRLYFGQPLQELRIDQLALLVGMVKGPSYYNPMRYAERARERRDLVLKLMMEH 350 Vibrio cholerae...
WP_031628122 242 RDILESYLNEVFLGQDGQRAIHGFGLASQYFFSQPLAELKLDQVALLVGMVKGPSYFNPRRYPDRALARRNLVLDVLAEQ 321 Pseudomonas
WP_010893404 269 RVILESYLNQVYLGQRGSQAVHGVATGAEFWYGRELGSLTTEQVALLIGLVKGPSYYDPRRFPDRALSRRNFVLGKLHEN 348 Xylella fastidiosa
3VMA_A       348 QIIDQELYDMLSARPLGVQPRGG--VISPQPAFMQLVRQELQAKLGDK-VKDLSGVKIFTTFDSVAQDAAEKAAVEGIPA 424 Escherichia col...
P02919       384 QIIDQELYDMLSARPLGVQPRGG--VISPQPAFMQLVRQELQAKLGDK-VKDLSGVKIFTTFDSVAQDAAEKAAVEGIPA 460 Escherichia col...
P57296       325 KYITRKIYKDLCKRSLNVQPKGN--IISSHPSFIQLVCEEFHKKIYNP-IKNFPGTKIFTTLDYTSQNAVEQAVKIEIPI 401 Buchnera aphidi...
P45345       339 KMIGDELYQLLSQRPLGVQKKGQ--ISRKYPAFIQTLQADLRRKLGEHkISSLLGARIFSTMDLKQQAQAENAVGNTVSQ 416 Haemophilus inf...
WP_011171753 394 GIIDAELYTMLSARPLGVQPKGG--VITPQPAFMQMVRQELQQKLGNK-VNDLSGVKIFTTLDPVSQDAAEKAIEDGVPA 470 Yersinia pestis
Q9KUC0       351 DILTAPEYQQAVTRPLDVQKTAQ--IASRQPAYFQQVSIELKEKLGDK-FKADSGLRVFTSLDPVSQSKLEQAIHDQIPQ 427 Vibrio cholerae...
WP_031628122 322 GVATQQEVDAAKLRPLGVTRQGSm-ADSSYPAFLDLVKRQLRQDYRDE-DLTEEGLRIFTSFDPILQEKAETSVNETLKR 399 Pseudomonas
WP_010893404 349 KLIDDAEYMRAQASSLGVPKEPGlvAANRFVAYLDLVRRQLAHDYPEN-VLRGAGMTVLTGMSPSAQSYAERGVQTTLSA 427 Xylella fastidiosa
3VMA_A       425 LKKQr--KLSDLETAIVVVDRFSGEVRAMVGGSEPQFAGYNRAMQARRSIGSLAKPATYLTALSQPKIYRLNTWIADAPI 502 Escherichia col...
P02919       461 LKKQr--KLSDLETAIVVVDRFSGEVRAMVGGSEPQFAGYNRAMQARRSIGSLAKPATYLTALSQPKIYRLNTWIADAPI 538 Escherichia col...
P57296       402 LKRKk--RLKDLEVAMIVIDRFTGEVQALIGSSKPEFNGYNRALKTRRSIGSLSKPITYLTALSQPEKYHLNTWISNYPL 479 Buchnera aphidi...
P45345       417 LQLKm--KNPHLEGAMIITDYRTGEIRAVVGGLQTQYAGFNRALMAKRQIGSLVKPSIYLTALSNPEQFRLNTPINNQPI 494 Haemophilus inf...
WP_011171753 471 LRAAr--NMNDLEAAMVVVDRFSGEVRAMVGGSQPQFAGFNRAMQARRLVGSLAKPPTYLAALSEPDKYRLNTWLSDQPL 548 Yersinia pestis
Q9KUC0       428 LAKT---AGKDLEAAAIAVDRHSGEIRAMVGGKRTGYDGFNRVLNASRQIGSLVKPAVYLTALAHPDQYNLATTLEDKPL 504 Vibrio cholerae...
WP_031628122 400 LSGRk--GVDQVEAAMVVTNPETGEIQALIGSRDPRFAGFNRALDAVRPIGSLIKPAVYLTALERPSKYTLTTWVQDEPF 477 Pseudomonas
WP_010893404 428 LEKVkgqKRPPLQAGLVLTDVHNGDVLAVVGSRDATQSGFNRAIEAQRQVGSLLKPFVYLLALASPDRWSLSSWVEDTPV 507 Xylella fastidiosa
3VMA_A       503 ALRQPNGQVWSPQNDDRRYseS--GRVMLVDALTRSMNVPTVNLGMALGLPAVTETWIKLGVPKDqLHPVPAMLLGALNL 580 Escherichia col...
P02919       539 ALRQPNGQVWSPQNDDRRY--SesGRVMLVDALTRSMNVPTVNLGMALGLPAVTETWIKLGVPKDqLHPVPAMLLGALNL 616 Escherichia col...
P57296       480 SIKLDSGQYWTPKNNNFSF--S--KKVLLLDALIHSINIPTVNLSINIGLKKLVDSWLLLGISKKyITPLPSISLGAINL 555 Buchnera aphidi...
P45345       495 TINVKGSPPWQPRNYDKKY--S--DSVMLMDALARSLNIPTVNIGMKVGLSKVIDTQKAMGWDNVeIPKVPAMLLGSYTI 570 Haemophilus inf...
WP_011171753 549 SLKLSNGSLWQPKNYDRQF--R--GQVMLMDALVNSLNIPTVNLGMSVGLDQISATLQRLGIPKSvINPVPAMLLGAIDL 624 Yersinia pestis
Q9KUC0       505 TLKGSEGSAWTPRNYDRQY--R--GEVPLYLALAQSLNVPTVALGMKLGIDQVSATLGKLGVNRDeIRPVPSMLLGSFSL 580 Vibrio cholerae...
WP_031628122 478 AVKGQDGQVWRPQNYDRRS--H--GTIFLYQGLANSYNLSTAKLGLDVGVPNVLQTVARLGINRD-WPAYPSMLLGAGSL 552 Pseudomonas
WP_010893404 508 SIPLAHGRIWSPSNSDNIS--H--GTVRLIDALAHSYNQATVRVGMQVGPERVAQLINVLAGLKA--DANPSLILGATDQ 581 Xylella fastidiosa
3VMA_A       581 TPIEVAQAFQTIASGGNRAPLSALRSVIAEDGKVLYQSFPQAERAVPAQ--AAYLTLWTMQQVVQRGTGRQLGAKY-P-N 656 Escherichia col...
P02919       617 TPIEVAQAFQTIASGGNRAPLSALRSVIAEDGKVLYQSFPQAERAVPAQ--AAYLTLWTMQQVVQRGTGRQLGAKY-P-N 692 Escherichia col...
P57296       556 TPFEIAQVFQIIGSGGYKSSLSSVRSIISDDGKVLYQNLPQSIHIESSE--ASYLTLYGMQQVVKSGTAKSLGTIF-K-E 631 Buchnera aphidi...
P45345       571 SPYDVTKLYQTLANQGGRIALTTVDSIADRQGNLIFQHDKSAKQVVPQE--AAFQTLFAMQQTVERGTARSLQKDY-A-D 646 Haemophilus inf...
WP_011171753 625 TPVEVAQEYQTIASGGNRAPLSAVRSVIAEDGTVLYQSFPQAERMVPAQ--ASYLTLYAMQQGVVRGTSRSLSAKF-G-K 700 Yersinia pestis
Q9KUC0       581 TPYQVAQMYQTLTNSGKKAPLSALRSVLDLEGNVLYESLPRVSQAVDQQ--AAWLTTYAMKQGVQEGTGRYLNAQF-S-S 656 Vibrio cholerae...
WP_031628122 553 SPMEVATMYQTIASGGFNTPLRGIRSVLTADGQPLKRYPFQVEQRFDSG--AVYLVQNAMQRVMREGTGRSVYSQL-PsS 629 Pseudomonas
WP_010893404 582 SPYAMTQLYQFLASGGEIQPLHAVRGVLDPQNKLLKRYDNTPAPAQPGDsvAANVISVALQEVVNSGTARQLIIDGlG-R 660 Xylella fastidiosa
3VMA_A       657 LHLAGKTGTTNNNVDTWFAGIDGSTVTITWVGRDNNQPTKLYGASGAMSIYQRYLANQTPTPLNLVPPEDIADMGVDYDG 736 Escherichia col...
P02919       693 LHLAGKTGTTNNNVDTWFAGIDGSTVTITWVGRDNNQPTKLYGASGAMSIYQRYLANQTPTPLNLVPPEDIADMGVDYDG 772 Escherichia col...
P57296       632 FSLAGKTGTTNNLVDNWFVGIDGKQIVITWIGRDNNHTTRLYSSSGAMQIYKRYLQYQRPVPLVLKAPNNINMFYINNLG 711 Buchnera aphidi...
P45345       647 LHLAGKTGTTNESRDTWFVGIDGKNISTVWLGRDDNGETKLTGASGALQIYKDYLNRTNIEKLAITPPTTVKWVGINQYG 726 Haemophilus inf...
WP_011171753 701 YNLAAKTGTTNDLRDSWFAGIDGKEVTIAWIGRDNNGPTKLTGASGALTLYRRYLENQTPLPLILQPPEGISQMNIDSAG 780 Yersinia pestis
Q9KUC0       657 AALAGKTGTTNDNRDSWFVGVDGREVTTIWLGRDDNQPTKLTGASGALRVYAQYLKYRIPEKLQLPWPEGITTFGFAKQT 736 Vibrio cholerae...
WP_031628122 630 LTLAGKTGTSNDSRDSWFSGFGGDLQAVVWLGRDDNGKTPLTGATGALQVWASFMRKAHPQSLEMPMPENVVMAWVDAQT 709 Pseudomonas
WP_010893404 661 LSPAGKTGTSNDGRDSWYAGYTGNHLAVIWVGNDQNEQTGLYGATGAMRVWSSIFSQL-PSTRLQVNGKGLDWQSVEPMG 739 Xylella fastidiosa
3VMA_A       737 NFVCS---GGMRILPVWTSDPqSLCQ 759 Escherichia coli K-12
P02919       773 NFVCS---GGMRILPVWTSDPqSLCQ 795 Escherichia coli K-12
P57296       712 ELFCKknnQHNRMLPIWSIKNkKICN 737 Buchnera aphidicola str. APS (Acyrthosiphon pisum)
P45345       727 DWDCEs----YRTIPIWLNNGqNFCG 748 Haemophilus influenzae Rd KW20
WP_011171753 781 NFVCGe-gSGMRVIPVWTENPqALCQ 805 Yersinia pestis
Q9KUC0       737 QGGLKldcDNAFKLPIWDNQQ-QLKQ 761 Vibrio cholerae O1 biovar El Tor str. N16961
WP_031628122 710 GQGSAadcPNAVQMPYIRGSEpAQGP 735 Pseudomonas
WP_010893404 740 TGTTDancPGARRFPFVAGFApPYAA 765 Xylella fastidiosa
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