3DEE


Conserved Protein Domain Family
DUF2063

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pfam09836: DUF2063 
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Putative DNA-binding domain
This family represents the N-terminal part of a Neisseria protein, UniProtKB:Q5F5I0, PDB:3dee. It runs from residues 31-117 as a helical bundle with 4 main helices. \From genomic context and the fold of the C-terminal part, it is suggested that this protein is involved in transcriptional regulation.
Statistics
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PSSM-Id: 430866
Aligned: 138 rows
Threshold Bit Score: 51.4324
Created: 23-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3DEE_A                   9 QYQHRFSQAIR---------GGEAAdglpqdRLNVYIRLIRNNIHSFIDRCYTETRQYFDSKEWSRLKEGFVRDARAQTP 79  Neiss...
Q090N0                   7 HFFDSMADFLAapaelerlraahpgwdespsRVALYGEFVSHHVRTTVAKLFPFTQACVGPERWEALLDAFEAQRPARHY 86  Stigm...
PRJNA61269:NIASO_08860   9 qYQSALANYCRt-------gMLENIpgvvkeNVPQYRRLVLNVIDDMLQNAYPLTYDLLEEAEWNAIVHDFFTNHPCQSP 81 
jgilanl:CHU3093          9 QYQRMLASYTRt-------gIETAIpgtkeeGIMRYRTMIYTIVNESLSTSYPLTRQLLTAQEWDDTVHRYFSTHACTSP 81 
EFP03346                10 ATQQQFCNWIRfpqs-elskALPAE------RMQIYRDLLFNNVCSFIDLVFPITRAILPAIQWQKLLTEFFQKAQCESP 82 
Q6FDM9                  10 TTQRQFCNWIRnpel-epppNFAAN------RMQVYRDLLFNNVCSFINLVFPVAQAMLPEQQWQQLLVEFFQKSQSQSP 82  Acine...
jgi:Hneap_0292           7 TLQSQFTAFIRnpehapvpeGCDPE------RMKLYHQLFFNNFDGILENTFDRTRAHLADEQWQVLVKLFFSSVPQHSP 80 
Q9HWS3                   7 QQQFSLARHLRdplgnapppDIEER------RLRVYRELFYNAIEGLLASGFPRLRGLLGEQQWHGLVREFYREERSHTP 80  Pseud...
CBA16483                 7 AQQLALTLHLRdpqrhappaDIEPH------RLAVYRALFFDNLAQLLSAQFPVLHATLGATDWDVLLRAFCAEHRARTP 80 
WP_005224287             6 AHQQAFCAHLRdperadaptDVAPE------RMRVYRELIFNNLDSLLAGSFPVLHRILKSAHWHALVRAFLVEHRARTP 79  Maric...
3DEE_A                  80 YFQEIPGEFLQ 90  Neisseria gonorrhoeae FA 1090
Q090N0                  87 EMNRMGEGFPA 97  Stigmatella aurantiaca DW4/3-1
PRJNA61269:NIASO_08860  82 QVWYMPKEFYQ 92 
jgilanl:CHU3093         82 YLWRMPLEFYE 92 
EFP03346                83 FYNDISLQFRE 93 
Q6FDM9                  83 FYNDISLQFRE 93  Acinetobacter baylyi
jgi:Hneap_0292          81 YLVDVPARFLE 91 
Q9HWS3                  81 LFTRIAGVFVD 91  Pseudomonas aeruginosa
CBA16483                81 LFPRLGGELVR 91 
WP_005224287            80 LFHRLPGEFVD 90  Marichromatium purpuratum
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