4E6F


Conserved Protein Domain Family
Bacova_04320_like

?
cd12190: Bacova_04320_like 
Click on image for an interactive view with Cn3D
Uncharacterized proteins similar to Bacteroides ovatus 4320
This model characterized a family of proteins conserved in Bacteroidetes, similar to B. ovatus ATCC 8483 reading frame 04320. Structurally, the protein resembles members of the SRPBCC domain superfamily (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC).
Statistics
?
PSSM-Id: 213397
Aligned: 47 rows
Threshold Bit Score: 86.5805
Created: 6-Sep-2012
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
4E6F_A        12 RYLVGAVPEv-----dGKVVFSKEFQIPGx-SQAQIYDTXTKWXDERLKENknidSRIVFSDEa-KGTIAGVGEEWIVFs 84  Bacteroides ova...
ZP_10332470   21 KYTMADVPMapidsvtGHVAYIGVVEVPGa-TADQLYTRAKAYLFKTFVNA----SAVIQVDDksGGLLAGKGLVLLPGe 95  Fibrisoma limi ...
YP_006255124  26 TFPEIRLPFd-----nGRIAYTGVVIVDSv-KMKELFVRAKEWTALTFNSA----QDVIQMDDkeAGKLIIKAIDKVNIs 95  Solitalea canad...
ZP_08474938   21 SPFTDVFPIv-----nGKVVYSEVIQVEGk-SVLDLYKNAKIWLVEAFKSS----KDVIQNDDkdNHIIIGKGYFEGVGh 90  Dysgonomonas ga...
YP_002308881  20 EIEDELIPV-------GNLTIEKTIEVPNt-PANKLYTIVNDWAVGFFANSn---NAVEFRDKe-EGIIIGKYRCNFDFa 87  Candidatus Azob...
ZP_07085558    9 LFLINCLIYa------QELKFEDVVKVDSltTKDELYNRARSWYADTFHSE----KDVMSIDDkiLGEISGNGAIRYEPr 78  Chryseobacteriu...
YP_006255067 411 GKITFPVSDs-----tNKVCYVGGIRLDSmsTKVELFQRAKDWITLNFQLE----NQVLHRDDlhNGVLIAKGFAGYTTk 481 Solitalea canad...
YP_001295696  12 PLLMFSQESs------GKLTYKNVIKVDSlkKSSQLYMLSRSWFAEKYNSA----KDVIQFEDkeEGKIIARGSFNYNSn 81  Flavobacterium ...
ZP_05547469   64 IEILSSVPFnd----dGSFTISYVRQVEGl-GKGTLYDNIYQSLVDVFVSA----KNILQMQDkeTGILVCKGMTEGYLi 134 Parabacteroides...
ZP_10332469   29 GKLMGVLPLk-----dGKVTYIVTETVNNa-SDLELFRQTRRWAAFRVASP----SDVFKLGDavTKDVIGSGYFNGIFl 98  Fibrisoma limi ...
4E6F_A        85 ss----alSLDRTLVNYQITVTCKP-GNCLVELEKIRFTYRe-------------------tEKYKAEEWITDKYALNk- 139 Bacteroides ova...
ZP_10332470   96 ta---skqAFRAAMLGPGAGDGIYYrLPIEFRFKDGKYRYEish----------------iqIVMGATTINLDDHPIPkf 156 Fibrisoma limi ...
YP_006255124  96 sks-lgmeNITTYSLYFTLNLTFKD-NKYKYELNNFRVMLAps-----------------keIPHPDETLVENTYQSYhk 156 Solitalea canad...
ZP_08474938   91 n------kNIVNAKYWFTIRIDCRE-GRYKYTITDFIYDFDvivmgtkthfnedfskwgnvaFDTKYKELLDKKYPPN-- 161 Dysgonomonas ga...
YP_002308881  88 t-----ksSPMWQQILVRVPNKVTMpVEIITKFTVISNDNEik------------------vKVVPNTDLSNYPFLLKmn 144 Candidatus Azob...
ZP_07085558   79 gfy--fgaLCATGYISYKINIYVKD-GRYKYNFHSFIHEGT---------------------RCPGGGGLVSYGLLTQ-- 132 Chryseobacteriu...
YP_006255067 482 l-----naKDFQHKLTWTMTITVKN-GGYTYEMTDIYSSEYasgnn-----------aytqsWTTPIEDLILSDIAFKd- 543 Solitalea canad...
YP_001295696  82 vf---vysNATKGHITYTLTIIVKD-GRYKYEASNFTHQGNpe-----------------niVGDVSFGLITSDEECPyn 140 Flavobacterium ...
ZP_05547469  135 fsmglmgkYVGSVPIHFTLKIQVRD-NRYKIDLYDIYVEKGdlneaea-------pietyltRDFYLTSFVSDGLGLTks 206 Parabacteroides...
ZP_10332469   99 n-----kgSYAGPLGNYVVTVECNQ-GAYRATLSNFRIDHL---------------------ITKTGVNNQVSGYAIEag 151 Fibrisoma limi ...
4E6F_A       140 ----------aKTKLVRGLAKWRRKTVDFADDXFXDVAVAF 170 Bacteroides ovatus ATCC 8483
ZP_10332470  157 ---------dpSQKISEGQYKKYMQTHEMFQTFIDNLKLAM 188 Fibrisoma limi BUZ 3
YP_006255124 157 ycceqkrdywvNKSMLRLWADILRNVDESAKIIIDELKIAV 197 Solitalea canadensis DSM 3403
ZP_08474938  162 -----------NERNAKQQEKYEKYKEELDNELEGKYKETI 191 Dysgonomonas gadei ATCC BAA-286
YP_002308881 145 e--------qqLLYVYKSRQKLILEYMDNMDNFIQSLKNFL 177 Candidatus Azobacteroides pseudotrichonymphae genomova...
ZP_07085558  133 -----------DKEHPKQPNKGWREVKDLANATAERLISSL 162 Chryseobacterium gleum ATCC 35910
YP_006255067 544 -----------NGDYKPLYKMHATSTDKSIKEVIESLKSAM 573 Solitalea canadensis DSM 3403
YP_001295696 141 i--------saKGWRNRVWRDLKEQIDGYINPIIISLNKYI 173 Flavobacterium psychrophilum JIP02/86
ZP_05547469  207 krt----dahyINVRTQVLLEQLYRLYQIENNIFNGVSQLK 243 Parabacteroides sp. D13
ZP_10332469  152 ----------tQLYNDKLVVEYFKAIDRNVQSLLASLKEFV 182 Fibrisoma limi BUZ 3
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap