2WY4,1VHB


Conserved Protein Domain Family
VtHb-like_SDgb

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cd14778: VtHb-like_SDgb 
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Vitreoscilla stercoraria hemoglobin and related proteins; single-domain globins
VtHb is homodimeric, and may both transport oxygen to terminal respiratory oxidases, and provide resistance to nitrosative stress. It has medium oxygen affinity and displays cooperative ligand-binding properties. VHb has biotechnological application, its expression in heterologous hosts (bacteria and plants) has improved growth and productivity under microaerobic conditions. Another member of this subfamily Campylobacter jejuni hemoglobin (Cgb) is monomeric, and plays a role in detoxifying NO. Along with a truncated globin Ctb, it is up-regulated by the transcription factor NssR in response to nitrosative stress.
Statistics
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PSSM-Id: 381286
Aligned: 8 rows
Threshold Bit Score: 210.751
Created: 11-Dec-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
heme binding
Conserved site includes 13 residues -Click on image for an interactive view with Cn3D
Feature 1:heme binding site [chemical binding site]
Evidence:
  • Structure:2WY4: Campylobacter jejuni SDgb binds cyanide ion/heme; contacts at 4A
  • Structure:1VHB: Vitreoscilla stercoraria dimeric hemoglobin binds heme; contacts at 4A
  • Citation:PMID 9115439

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                ##             #  #                    #
2WY4_A         1 MTKEQIQIIKDCVPILQKNGEDLTNEFYKIMFNDYPEVKPMFNMEKQISGEQPKALAMAILMAAKNIENLENMRSFVDKV 80  Campylobacter j...
1VHB_A         2 LDQQTINIIKATVPVLKEHGVTITTTFYKNLFAKHPEVRPLFDMGRQESLEQPKALAMTVLAAAQNIENLPAILPAVKKI 81  Vitreoscilla st...
EEO35832       2 LSQKTIDIVKATVPALKERGVEITQVFYKNMLGENPDIRAMFDPEKQKDGSQPKALAMTVLAAAQNIENLAILAPAVQKI 81  Fusobacterium m...
EFF64187       2 LDQQTIEIIKSTVPALKSHGIQITTTFYKNMFEQNPEVAPLFNMERQKSGEQPKALALTVLAAAQNVDNLGAIMPVVNKI 81  Turicibacter sa...
EGX28538       3 LDYKVKCIIKDCVPVLRDRGVELTENFYNLMFTNNPEVRSLFDDDRQKSGEQAKALASSLLAVAQNIDNLEKILPTVKKI 82  Candidatus Arth...
WP_005219157   2 LDKQTIEIVKSTIPVLRTHGETITKEFYRILFDEYPQVRTMFDMTKQQNGKQPKALAMAILHAAMNIENLDTIHSQIESI 81  Helicobacter
EEQ63497       2 LDIQTKELVKSTIPALKSQGEDITKVFYRELFTRYPQVKSMFDMQKQKDGSQPKALAMAVLNAAKNIDNLEKIRPSIESI 81  Helicobacter pu...
ENZ03987       2 LDQKTKDIVKSTVPVLKEHGVEITTEFYKDMFKRYPEVKNMFDMSKQKSGEQPKALAMTVLAAAQNIDNLEVLAPAVERI 81  Clostridium col...
Feature 1          ##    #   ##  #                              #   #        
2WY4_A        81 AITHVNLGVKEEHYPIVGACLLKAIKNLLN--PDEATLKAWEVAYGKIAKFYIDIEKKLY 138 Campylobacter jejuni subsp. jejuni ...
1VHB_A        82 AVKHCQAGVAAAHYPIVGQELLGAIKEVLGdaATDDILDAWGKAYGVIADVFIQVEADLY 141 Vitreoscilla stercoraria
EEO35832      82 AKTHVNVNVKPEHYPIVGKYLLGAIKEVLGetATEEVLNAWAEAYGVIADIFIKVEADIY 141 Fusobacterium mortiferum ATCC 9817
EFF64187      82 AVKHCDCGVLEEHYPIVGAHLLGAIKEVLGeaATDEIIEAWAKTYDVIAQVFINVEKEIY 141 Turicibacter sanguinis PC909
EGX28538      83 GMSHVKANVKPEHYPIVGKNLLLAIKETLGdtATDELINAFSEVYKYISKIFIDIEKELY 142 Candidatus Arthromitus sp. SFB-mous...
WP_005219157  82 GKTHVRLNVKKEHYPIVGACLIKAIENVLQenATKEILQAWEKAYQEIANYYIQVEEKMY 141 Helicobacter
EEQ63497      82 GKTHVRLNVRPEHYPLVGECLLVAIKEVLG--ASDEVLEAWSKAYGEIAEFYIDIEKKIY 139 Helicobacter pullorum MIT 98-5489
ENZ03987      82 GKIHVDAKVKAEHYPIVGECLLRAIKTVLGdsATDEIIEAWGQAYEEIAKIFINVENKMY 141 Clostridium colicanis 209318

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