6W6W


Conserved Protein Domain Family
STN1_2

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pfam09170: STN1_2 
CST, complex subunit STN1, C terminal
STN1 is a component of the CST complex, a complex that binds to single-stranded DNA and is required for protecting telomeres from DNA degradation. The CST complex binds single-stranded DNA with high affinity in a sequence-independent manner, while isolated subunits bind DNA with low affinity on their own. In addition to telomere protection, the CST complex probably has a more general role in DNA metabolism at non-telomeric sites. This entry represents the C-terminal region of Stn1 which has two winged helix-turn-helix (wHTH) motifs, wHTH1 and wHTH2. wHTH1 is structurally similar to that in RPA32 with a large insertion between helices alpha2 and alpha3, unique to Stn1, that may allow interaction with a different set of proteins that function at telomeres such as Ctc1. wHTH2 is most similar to the DNA-binding wHTH motifs of the pur operon repressor and RepE replication initiator, but it does not bind double-stranded DNA.
Statistics
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PSSM-Id: 462701
Aligned: 22 rows
Threshold Bit Score: 205.609
Created: 23-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6W6W_C       208 PSLTSLLSEK---AKEFLMENRVQSFYQQELEMVESLLSLANQPVIHSASSDQVnFKKDTTSKAIHSIFKNAIQLLQEKG 284 human
XP_015202900 209 TSLPSLLGQVclsLKDFLRKEAVQSFHPNDLETVNSLVSLASHDLQNGPDQQQA-ARSLSTSKQIHSVFREAIQVLQEEG 287
XP_008104810 200 FGSVSVLSEK---IRAFLLRNKIQSFYKQDLETVEEFVDLIRQ----GTAAEQTdSKPHSFSSLIRESFLEAIRILENKG 272
XP_005470222 199 DSAVSSLSRAtkiLKDFLKQKSVSRFRPYDVQDL--LQPLISSQPQAASADQEP-VAGPSACQQLRQLLKEALQILQDEG 275
1_pfamImport   1 EPAVSALSKAaniIKEFLIQKSVVRFRPYDVLDL--LEPLVPRQPRTESADQKP-MAGPSACQQLRQLQKEALKVLQDDG 77 
XP_023190121 197 DSAETSLSKAtnvIKDFLKQRLVAKFRPYDVQDL--LQPLISSRLQA----QEA-VAGPSGCQQLNQLLKEVLQVLQDEG 269
B8JKF4       205 SHPQYLLSRAvltLKEFLLEKEVTRFRPYDVEFL--LHPLIQR----SSAEQEAdQPGTSFATQVGKLLKETLSFLQDEG 278 zebrafish
XP_007251425 203 PNFQSLLGQSvriLKKFLKEKEVAKFRPYDVEYL--LHPLIQWPPRNTASGQEVtSAGPSFSTQVKNLLKETLKILQSEG 280
XP_005995880 208 PVLVAALADK---IRQFVLENHVQTFSVKDLETVKSLVCFANRPVQSPSPAEEA-SKVVSTSKQVRGAFNEAIQLLMNAG 283
XP_005008981 197 DFSIYILHEK---VKDFLLENKIQTFYQQELETIDTLVSLAGEPLSSRSC--QVnSKPDSSSKRIHSVFKEAIKMLQEEG 271
6W6W_C       285 LVFQKDDGFDNLYYVTREDKDLHRKIHRIIQQDCQKPNHMEKGCHFLHILACARLSIRPGLSEAVLQQVLELLEDQSDIV 364 human
XP_015202900 288 LLFRKAGSQEEVYQVTEQDKELHRVTKEIICEDSRREKYAEKGCHFLHILSCVRQSYSRNISEAAMRLVLSALECNSDII 367
XP_008104810 273 VLFQKSKNPNDMYYVTEQDRELHRVTLKVLKEDCKRPKYAEKGCHLRHIHNCVNQNYSPYVTEIVVRCLLDWLETNSDIV 352
XP_005470222 276 AVYRKVKSQDEVYLVTVQDKDLLVAVKDIIREDSRREKYVEKGCHVLHILSAVRQRYSLNVSRAALELVLKTLECNSDII 355
1_pfamImport  78 VVYCKFKTQDEVYHVTVQDKDLIIAIKDIIREDSKKEKYAEKGCHLLHILSAVRQRYSLSVSKEALELVLQSLECSSDIV 157
XP_023190121 270 TVYRKVKSQDEVYHVTIQDKDLLIAVKDIIREDSKREKYAEKGCHILHILSAVRQRYSLNVSKAALELVLQTLECDSDIV 349
B8JKF4       279 QIFRKKRTQDEVYNVTEQDKDLHIAIKDVLREDTKREKYAEKGCHVLHILSSVRQRYSQNLSREVLEVALTFLESNSDII 358 zebrafish
XP_007251425 281 EIFRKVLSPDELYNVTEQDKDLLAAIRDMIREDSKREKYAEKGCHVLHILSSVRQKYSRNLSREALEVALKFLECNSDII 360
XP_005995880 284 SIFQKKSSSED-YVVTSENKELRTLTLDTVREDCRKWRHAEKGCSFSYILKCIQHSYNPCVTKAVMQQVLYHLEDDSDIY 362
XP_005008981 272 VVFQKPSSSKDLYHVTDYDKDLLKVTLDVVKEDCRKPRHAEKGCHFLHVLNCVRQNYNPSLAEVVMHRVLELLESNSDVV 351
6W6W_C       365 STMEHYYTAF 374 human
XP_015202900 368 STTDSHYTAL 377
XP_008104810 353 TTMEGYYTVF 362
XP_005470222 356 STSDSHYTAI 365
1_pfamImport 158 STCDNYYMMF 167
XP_023190121 350 STSDSHYIAF 359
B8JKF4       359 STTEAHYIVL 368 zebrafish
XP_007251425 361 STMDSHYTVL 370
XP_005995880 363 STMDGHYMAF 372
XP_005008981 352 STMEGYYMAF 361
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