1DN1,1FIO


Conserved Protein Domain Family
SynN

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cd00179: SynN 
Click on image for an interactive view with Cn3D
Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Statistics
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PSSM-Id: 238105
Aligned: 69 rows
Threshold Bit Score: 91.577
Created: 1-Nov-2000
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 20 residues -Click on image for an interactive view with Cn3D
Feature 1:interdomain interaction site
Evidence:
  • Comment:interactions with t_SNARE domain (H3)
  • Structure:1DN1; rat Syntaxin 1A complex

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                    #          #  ##      #   #  #      #            
1DN1_B     30 MDEFFEQVEEIRGFIDKIAENVEEVKRKHSAIlaspnpdektKEELEELMSDIKKTANKVRSKLKSIEQSIEqeeglnrs 109 Norway rat
BAB29024   17 WWGLCALAQRISSNIQKITQCSVEIQRTLNQLgtpqd-spelRQQLQQKQQYTNQLAKETDKYIKEFGSLPTtps----- 90  house mouse
O15400      8 GGDPAQLAQRISSNIQKITQCSVEIQRTLNQLgtpqd-spelRQQLQQKQQYTNQLAKETDKYIKEFGSLPTtps----- 81  human
NP_003560   8 GGDPTQLAQRISSNIQKITQCSVEIQRTLNQLgtpqd-spelRQQLQQKQQYTNQLAKETDKYIKEFGSLPTtps----- 81  human
O70257      8 GGDPAQLAQRISSNIQKITQCSAEIQRTLNQLgtpqd-tpelRQQLQQEQQYTNQLAKETDKYIKEFGFLPTtps----- 81  Norway rat
BAA90699    8 GGDSAQLAQRISSNIQKITQCSEEIQRTLNQLgtpqd-spelRQQLQQKQQYTNQLAKETDKYIKEFGSLPTtps----- 81  house mouse
BAB22416    8 GGDSAHVAQRISSNIQKITQCSVEIQRTLNQLgtpqd-spelRQQLQQKQQYTNQLAKETDKYIKEFGSLPTtps----- 81  house mouse
O70439      8 GGDSAQLAQRISSNIQKITQCSVEIQRTLNQLgtpqd-spelRQLLQQKQQYTNQLAKETDKYIKEFGSLPTtps----- 81  house mouse
2501101    26 PSSRGDPSQEVAAGIFRISTAVNSFFRLVNSIgtpkd-tlelRDKLQKTRLQISELVKNTSAKLKEASEADLhgs----- 99  thale cress
5922624    26 AAAGAGASQAVASGVFQINTAVSTFQRLVNTLgtpkd-tpdlRERIHKTRQHITQLVKDTSEKLKQASEADHrve----- 99  Oryza sativa (japo...
Feature 1               #    #  #     #      ##  ## ##  #                             #   
1DN1_B    110 sadlRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEI-TGRTTTSEELEDMlesg---npaiFASGI 181 Norway rat
BAB29024   91 --eqRQRKIQKDRLVAEFTTSLTNFQKAQRQAAEREKEFVARVRAS-SRVSGGFPEDSSKekn-----lvsWESQT 158 house mouse
O15400     82 --eqRQRKIQKDRLVAEFTTSLTNFQKVQRQAAEREKEFVARVRAS-SRVSGSFPEDSSKern-----lvsWESQT 149 human
NP_003560  82 --eqRQRKIQKDRLVAEFTTSLTNFQKVQRQAAEREKEFVARVRAS-SRVSGSFPEDSSKern-----lvsWESQT 149 human
O70257     82 --eqRQRKIQKDRLVAEFTTALTNFQKVQRQAAEREKEFVARVRAS-SRVSGGFPEDSSKakn-----fvsWESQT 149 Norway rat
BAA90699   82 --eqRQRKIQKDRLVAEFTTSLTNFQKAQRQAAEREKEFVARVRAS-SRVSGGFPEDSSKekn-----lvsWESQT 149 house mouse
BAB22416   82 --eqRQRKIQKDRLVAEFTTSLTNFQKAQRQAAEREKEFVARVRAS-SRVSGGFPEDSSKekn-----lvsWESQT 149 house mouse
O70439     82 --eqRQRKIQKDRLVAEFTTSLTNFQKAQRQAAEREKEFVARVRAS-SRVSGGFPEDSSKekn-----lvsWESQT 149 house mouse
2501101   100 --asQIKKIADAKLAKDFQSVLKEFQKAQRLAAEREITYTPVVTKE-IPTSYNAPELDTEslrisqqqallLQSRR 172 thale cress
5922624   100 --vsASKKIADAKLAKDFQAVLKEFQKAQRLAVEREAAYAPFISQAgLPQSYNSSEVNNGadklaeqrtalLESRR 173 Oryza sativa (japonica...

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