Conserved Protein Domain Family
AP_delta-COPI_MHD

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cd09254: AP_delta-COPI_MHD 
Mu homology domain (MHD) of adaptor protein (AP) coat protein I (COPI) delta subunit
COPI complex-coated vesicles function in the early secretory pathway. They mediate the retrograde transport from the Golgi to the ER, and intra-Golgi transport. COPI complex-coated vesicles consist of a small GTPase, ADP-ribosylation factor 1 (ARF1) and a heteroheptameric coatomer composed of two subcomplexes, F-COPI and B-COPI. ARF1 regulates COPI vesicle formation by recruiting the coatomer onto Golgi membranes to initiate its coat function. Coatomer complexes then bind cargo molecules and self-assemble to form spherical cages that yield COPI-coated vesicles. The heterotetrameric F-COPI subcomplex contains beta-, gamma-, delta-, and zeta-COP subunits, where beta- and gamma-COP subunits are related to the large AP subunits, and delta- and zeta-COP subunits are related to the medium and small AP subunits, respectively. Due to the sequence similarity to the AP complexes, the F-COPI subcomplex might play a role in the cargo-binding. The heterotrimeric B-COPI contains alpha-, beta-, and epsilon-COP subunits, which are not related to the adaptins. This subcomplex is thought to participate in the cage-forming and might serve a function similar to that of clathrin. This family corresponds to the mu homology domain of delta-subunit of COPI complex (delta-COP), which is distantly related to the C-terminal domain of mu chains among AP complexes. The delta-COP subunit appears tightly associated with the beta-COP subunit to confer its interaction with ARF1. In addition, both delta- and beta-COP subunits contribute to a common binding site for arginine (R)-based signals, which are sorting motifs conferring transient endoplasmic reticulum (ER) localization to unassembled subunits of multimeric membrane proteins.
Statistics
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PSSM-Id: 271162
Aligned: 60 rows
Threshold Bit Score: 139.286
Created: 28-Jul-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
P48444       272 ESVHMKIEEKITLTCg-RDGGLQNMELHGMIMLRISDdkyGRIRLHVENed---kkGVQLQTHPNVDKklftaeSLIGLK 347 human
BAE94775     234 SNAIVKVSEESHITVs-AETSAVNVVLNGTLAIAVAEgveAEMKLAPIGv------VAKAQMHPHVDPkaf-vdRILKLK 305 Entamoeba histo...
XP_002996234 199 KDIFILLKEKMKCQVd-VENNIKVLELNGEMTLNIKNekyKNIQIDVKGd------TSKCKFSPKLDKea---vKCNIIR 268 Nosema ceranae ...
XP_001609723 263 APVVIKVVEMCTGNIh-MEGDVDFLNVQGELMLTIYEesaRMVGFSFVAn-----pEFKMRFHPIINKeta-skNIVELQ 335 Babesia bovis T2Bo
XP_001348030 252 KPINIIITENIICTLs-SEGTLCDLDIQGTFNLQINNhnySKVIVELDNe-----ySEKAKIHPILDKnky-nsNILELK 324 Plasmodium falc...
XP_953001    229 APVVVQIIETCNGNLh-LDGDVDSLNVQGELVTTVFEeqaQSASLQFTSn-----kDIKMKYHPMVDKkmv-tkSKIELQ 301 Theileria annul...
NP_597163    197 SPVFIVFKERLKMVMd-KENNIKSGEVQGDMSITIKEeeyKDIEIRLGNv------GTDVKFSPNLDKsv---sSSGVLR 266 Encephalitozoon...
P43621       289 NGILISIKEVINAEFs-RDGTIHSSELKGVLELRINDhdlSHSNLKLADsidvrdkSFQFKTHPNIDKqsflstKLISLR 367 Saccharomyces c...
NP_985821    280 EGILVSVKETVNAEIa-RDGTISTSELKGVLELRIKKpelSHVRLILDSavdvkdrSFQFKTHPNIDKalfmssKVIGLK 358 Ashbya gossypii...
XP_002139634 309 DDDNALIEERCEAILaiDGSLLSKVDIQGTFQIKLEKgefPEYTFHEEDe------RFQYKVHPNLSKekyqrdGLLTLR 382 Cryptosporidium...
P48444       348 Np-EKSFPVNSDVGv-lKWRLQTtee---sfIPLTINCWPSEsg--ngCDVNIEYELqed--nleLNDVVITIPLPsgvG 418 human
BAE94775     306 E--GKKLAVNTPAVy-vKWNYKAee----fsLPITFTCWPAEaq--ngLTLSMSYEAtq-----eLKGVVVEIPNLa--P 369 Entamoeba histo...
XP_002996234 269 S--SKDFSLNKNIAl-mKWKFQDik-----kLPISFTFWPSEi-----KPKTFQVSLe-------ITAEEDLDNLLi--Y 326 Nosema ceranae ...
XP_001609723 336 Ns-HQGHKIGHSTSl-vKWRQKStde---tsFPLSVSCWPNTnl--gqTTVTVEIQNnsd---avINSVNFQILDSr-fN 404 Babesia bovis T2Bo
XP_001348030 325 Dk-SKNFRINTIYPl-lKWKINHind---syIPLNISCWPCEdn--esTLLSLEIENkrnnndelIYDLNVNLMCPs-aH 396 Plasmodium falc...
XP_953001    302 N--GFNLAQPLSII---KWKYKLse----edFPLSVTCWPSEgt--teCVVVIEITNnsn---ltFNDLTFQVLHSr-fD 366 Theileria annul...
NP_597163    267 C--EKGFPVEKNVAl-vKWRSSDir-----eAPITFTFWPSEtsl-nvYQIMLEYTAec-----nMKDLSVFFPKAn--I 330 Encephalitozoon...
P43621       368 Dk-SKAFPANDQSLgvlRWRKVApaed-dslIPLTLTTWVSPsesqqgFDVIIEYESvle---teLADVIFTIPVFp-qE 441 Saccharomyces c...
NP_985821    359 Dp-EKSFPSNDQSLgvlRWRKVGsadd-pslIPLQVSTWVSPad--gaFDITVEFEIneay-nqeIKDLRFVLPLYt--T 431 Ashbya gossypii...
XP_002139634 383 KdlKSALPKNILIPl-vKWRSSGnntvgtfeLPITISCWPVEtgd-gfTNVTLEIESnr-----lTENIAIIIPISs-iI 454 Cryptosporidium...
P48444       419 APVIGei---dGEYRHDSrr--nTLEWCLPVIDaknKSGSLEFSIAGqp---ndFFPVQVSFVSKKn------yCNIQVT 484 human
BAE94775     370 ITVVSi----dGSLEVTD-----KIQWIIGDVNv-gSNGSLEIEISGegletskLFPICVEYLHEHt------lTGNEVV 433 Entamoeba histo...
XP_002996234 327 IPTKNm-----LEKNTSE-----FLEWNVGNIKk-dNSDSFDFQCKCndi--vnIFPIDVYFTSNK--------INLEIE 385 Nosema ceranae ...
XP_001609723 405 QIIVNsh--dlGNIERNHd----ALNWVLGNLCp-qQSGRVELTTNGdl---dsILPFTLVAKVSNs------vAQLNVT 468 Babesia bovis T2Bo
XP_001348030 397 KPQIIsn--dkGIIEHDGv----LLAWKVDELKn-nQSCQIEMSIQAnp---esVFPFSVEAKSNMl------aHKLNVL 460 Plasmodium falc...
XP_953001    367 NIKVNyn--egGNVDSNPd----SLVWVVPTFSe-sDSVKLEFSTTTdl---nnILPFTLVANSQDp------lSNVKVL 430 Theileria annul...
NP_597163    331 SNVVIs----gSARESDA-----HIEWNIGDVEk-gFSDTLEFSCTCsdp--agIFPLEIYFTSDFv------fTRLFAE 392 Encephalitozoon...
P43621       442 PVDINtesstcSDAEVVNmdqemGTSIKISKIAa-nDAGALAFTIEApye--daLYPMTVSFQESTrdklaksfTGMAIQ 518 Saccharomyces c...
NP_985821    432 DVVIKdds-ndVNAEIETideehGIVVKVQSLVp-gVSGVFCVSVETsde--eaLFPMSVVFSHTDask---tfSRVGIS 504 Ashbya gossypii...
XP_002139634 455 SYNISn-----GIFDSSQtnsknSVIWNIESLSp-gNNAILEFITEQr-----qFVPIKINAFIPTys-----yCNLSLV 518 Cryptosporidium...
P48444       485 KVTQvd--gnSPVRFSTETTFLVDKY 508 human
BAE94775     434 EVISn----gQSIEFEKEVMLNATYQ 455 Entamoeba histolytica
XP_002996234 386 EVKIketegdLEIRKVLEAEEFKLEY 411 Nosema ceranae BRL01
XP_001609723 469 RCYDmt--sgVPLEYVLKTETSFSMT 492 Babesia bovis T2Bo
XP_001348030 461 KVYDed--tkKDIEYEIKKNITYLFT 484 Plasmodium falciparum 3D7
XP_953001    431 ECYDkn--sgEALTFLTNQQVYNRDD 454 Theileria annulata strain Ankara
NP_597163    393 KVERng---eEINEVEIKKVFEVDKF 415 Encephalitozoon cuniculi GB-M1
P43621       519 SVVMand-hdQELPYDVITSLKSDEY 543 Saccharomyces cerevisiae
NP_985821    505 KVTSakd-daEELPFEATSSLRTDEY 529 Ashbya gossypii ATCC 10895
XP_002139634 519 RDHM------KVRPYRKTLLNLTLNQ 538 Cryptosporidium muris RN66
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