Conserved Protein Domain Family
GldM_gliding

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TIGR03517: GldM_gliding 
gliding motility-associated protein GldM
This protein family, GldM, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile. The best conserved region, toward the N-terminus, is centered on a highly hydrobobic probable transmembrane helix. Two paralogs are found in Cytophaga hutchinsonii.
Statistics
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PSSM-Id: 274624
Aligned: 7 rows
Threshold Bit Score: 535.159
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_011586832   1 MSTGKETPRQRMIGMMYLVLTALLALQVSSAIIEKFYALNQSMETTVNNGIQYNTDRLAIIKKAVANRGnsAADQQTQTQ 80  Cytophaga hutch...
WP_005874203   3 VGSNGNANRQKMINLMYLVFIAMMALNVSSEVLDGFDKVDKSLASSIDGSDKRNNLVLSELNTAYRTNP--EKVKVWYER 80  Porphyromonas g...
WP_014709418   3 IIKRKVSPRQKMINLMYVVLMAMLALNISTEVLNGFSIVEESLNRTTGNSSMENKAIFDELEQMMQKNP--EKVKAWFAM 80  Prevotella inte...
WP_011710859   1 MASGKQSPRQKMINLMYLVFIAMMALNMSKEVLTAFGLMNEKLTASTANYEERNNALMAGLATKVEEQP--AKYTSIKAD 78  Gramella forsetii
WP_011583581   1 MAGGKESPRQKMIGMMYLVLTALLALQVSSAIMEKFIFLDESLMYAVGAADKGNAETVAKIDKAVADGG--GKDKAVSDK 78  Cytophaga hutch...
WP_012023931   1 MAGGKLTPRQKMINLMYLVFIAMLAMNVSKEVISAFGLMNEKFEAANTSSVTTNESLLTSLDQKAAEAK--GEFAKAAET 78  Flavobacterium ...
WP_005803170   1 MAKYTLPPRQKMINLLYVVLIAMLAINISSDVLEGYGQMNNDYLPQIKKLEEYNRTLLERINSRNDKAA---------LS 71  Bacteroides
WP_011586832  81 AEELRTKTESVVSFMNKLKTEMIVKTGGYDEdgN-LKGAKEETEVEVYMLGTn-KLNGKAYELQNKLNEY---IVFVNKS 155 Cytophaga hutch...
WP_005874203  81 SLVLQKEADSLCTFIDDLKLAIARESDGKDA--K-VNDIRRKDNLDASSVIMlnPINGKGSTLRKEVDKFrelVATLMTD 157 Porphyromonas g...
WP_014709418  81 ASTVRNMSDSLFNYAQQLKIDIVKEADGQDGd---PLNIRNKENLEAAGIVMlaPGTGQGHKLYDAINSYrerILNFVTD 157 Prevotella inte...
WP_011710859  79 ADKIHELSSNFTNYVEGVKDELKTSVDDPKN-----YETMDQSSAMDEMFFQsgRISPRGEEFLAQIETFrngVSEILDD 153 Gramella forsetii
WP_011583581  79 AIQVRTKTAEMIKTMNDLREEMIMKSGGREAdgS-YKGAKEEEAIAGLMVGTegAKNGKAYALQTSLNKYgqeVIPGIVg 157 Cytophaga hutch...
WP_012023931  79 AHKVQAASKEFYDYIGTLKTQAVKGFEVDKEtgKmPYEAMDRGDNIDDWFTGd-gYTKKGNEIIAKIEKYksdIKAALGT 157 Flavobacterium ...
WP_005803170  72 AQNIDAAAGKLMDTLEELKEDIARKADKEKYeaG---KLKAKDDLNAVPEVFlsVTGGKGKTLRLSLDTFkedALSLIKN 148 Bacteroides
WP_011586832 156 -SGMNFSKLALDAKDDPmyqnnadqKNKDFAQLNFAQTPLVAAMAVVSDLQTKVTNIESTLMNQYLATLGQDDFMVDNMI 234 Cytophaga hutch...
WP_005874203 158 kAKLKLIEQALNTESGT--------KGKSWESSLFENMPTVAAITLLTKLQSDVRYAQGEVLADLVKSVDVGDYRVNSIT 229 Porphyromonas g...
WP_014709418 158 pLQKKIIASNLSTAVPHh------sLNKNWEEYMFENMPTSAAVTLLSKLQSDIRYAEGEVLHTLVANVGLKDLRVNKLQ 231 Prevotella inte...
WP_011710859 154 gYNTISQKVNLQKEFGTepen-vegAKVPWLKYRFEGFPLVASITQLTQMQADIKSTESEILSSMLSGQLQSDVSLSNYQ 232 Gramella forsetii
WP_011583581 158 -KDMPAIKIAMDGKEDPkydkkpdqKSKDFGKLNFAETPLVAALAVMATFESEVKKIETQALDLLASQVGAADLKFDQVF 236 Cytophaga hutch...
WP_012023931 158 dKKYAGIISEVEKKFDVsdvknkegIKEKYLAYHFKGFPAIASAAKLSAWQNDVKKTEADVYNSALGKAAVAAASYSNYQ 237 Flavobacterium ...
WP_005803170 149 dAHRQLVGTYLNTESp--------gTGISWEKETFSYLPAIGGVTFINKMQEEVLLCVNEVYRSLLYEEAED----GKGG 216 Bacteroides
WP_011586832 235 PIVRAKSKYVPAGTTYEAEVLMAASSSSLAPTMQV-G-TQVLTVnkE-GIGSYNFKAGggaysadGLLKKTWTAQIKIK- 310 Cytophaga hutch...
WP_005874203 230 AQVIPQSQIVMSGDTYKANIVLSSVDTTQRPDVFV-N-GKLLSP--E-NMGLFTATAG-------APGTYPVKGYIEMMg 297 Porphyromonas g...
WP_014709418 232 AFVVPSQTRLYPGETLTAQMLMGAVDSTQQPQVYV-N-GQLIRG--N-KI---TLRAG-------APGKHTISGYMLIK- 295 Prevotella inte...
WP_011710859 233 AIVIPDKPAFFSGENFSGKVVLGRFDNTLQFENVViN-GKKIENtqA-GQVVLEFPAG-------NVGEQKISGELQYM- 302 Gramella forsetii
WP_011583581 237 AVATAKSGVVAAGTDYEAELFLAASSSAVNPIMSR-N-GAPLAV--EnGRGKVKFKASatnydaeGNSKQNWKGQIKIN- 311 Cytophaga hutch...
WP_012023931 238 AIVVLDKNAYFQGEKVTGKVVLGRYDENTKPTSFQ-GpGQI--V--N-GQAVISLTAG-------GVGEQDINGQFTFL- 303 Flavobacterium ...
WP_005803170 217 AFVFINED----------QMIVNKDGTVDLPVVQ---------------------------------------------- 240 Bacteroides
WP_011586832 311 KpNGKDTLYTVSEDYFVV--------------------KPVIQIQSAAQTGLYFNCGNKVDIMVPALGAEYnpeFKATGA 370 Cytophaga hutch...
WP_005874203 298 N-DGVKIRRDFESEYFVT--------------------EPMASVAPTMMNVLYAGIDNPINIAVPGVAQQN---VSATIN 353 Porphyromonas g...
WP_014709418 296 DlAGNVIRRNFKQDYWVTggpkperyispdgmqqvpafEGVATIAADLMNVLYAGFDNPITISIPNTGQND---VQASMS 372 Prevotella inte...
WP_011710859 303 E-NDSLKSISISDSYNVIp------------------lPNSAVISADKMNVVYRGVQNPMTISIPGVS--N---VSANAP 358 Gramella forsetii
WP_011583581 312 N-KGKDTIFSIDVPYIVA--------------------KPVIQIQSASVNALYLRCGNELSVQVPALGATYnpsFTASGA 370 Cytophaga hutch...
WP_012023931 304 E-DGKNIPLKFSGKYVVVp------------------rPNSATISADKMNVVYRGVVNPISVSFAGVDANK---IVASAP 361 Flavobacterium ...
WP_005803170 241 ----------------IT--------------------PALTSI-------LYTDYENPLNILTAGIPFNE---VTFRMT 274 Bacteroides
WP_011586832 371 TVKSTGTKGrVYIIPNAAS-TKIAVYNKGQ------FIGDENFNVKAIPKPTIEVRVNGQLINARTGISHMALKNISIKA 443 Cytophaga hutch...
WP_005874203 354 NGTLTRRGN-LWIARPTKVgSEAIISVTAQsggrtiQMAKTTLRVRALPDPLPYIEYKDVQGNTKRFKGGRLGKREILAA 432 Porphyromonas g...
WP_014709418 373 GGSLVSRGGgKFIARPTSVgNPVTISVSAKg----rKIGEYKFRVRKLPDPAPYIAMG-----ADRFKSGALSKAALMSA 443 Prevotella inte...
WP_011710859 359 GLRSAGGAGnYLMDVTTLQaREVTISVSGTlpggksVSDKKTFRVKDIPRPVGTIRGED---------GAVSMQRNSLEI 429 Gramella forsetii
WP_011583581 371 TLKPLG-KGvVVVIPTSATgVKLNVASGGN------AIGSQDFKVRGIPKPEILVLNGGKEVDQKNGVAAPGPRSLQVKA 443 Cytophaga hutch...
WP_012023931 362 GLSSAGKPGkYNMSPG--QgTEATISVTGTlpngdkVTDKKTFRIKGIPGPTGTIRGE---------MGVVKGPKSNLEI 430 Flavobacterium ...
WP_005803170 275 NGKILKRGN-HCIAVPDEKaQTATVTATQIkngvarQLAEYRYTVKALPDPTPYILCTDENGRTVQYRGNVPINKRLVSN 353 Bacteroides
WP_011586832 444 IPDADFAASQPEDAMYKVTEWEIDFGRGRRPVpglPK-MTPSDQLVSMSGKAQNLQDKDMIFVTPKKIMRKNYLGTWEEV 522 Cytophaga hutch...
WP_005874203 433 GGIKAALDDDLLEVNYTVVKFQLVFYDSMGNS---IP-EVSDGASFSERQKRQIQNLGKGKRFYVTEVIARGPDGIERKI 508 Porphyromonas g...
WP_014709418 444 SGIHAAIDDGLLDIPFSVTSFRTVFFDNMGNA---VP-LASNGSQFSAQQKEQFRHLSRNKRFYITNVVVHGPDGTTRTL 519 Prevotella inte...
WP_011710859 430 ATVGANLPDFDFDLNLNVSSFKFKVPGQP-------T-IIVNGSRLDDRAKAALRRAGRGESVQIYDINATLAGNSSYKL 501 Gramella forsetii
WP_011583581 444 KADESFAQFLPKDARYNVTKWNVMLARGKRPV---TQ-QNFTTEMANLSSFASQAQAGDRLIIEVQDVYRTNFLGEKEKV 519 Cytophaga hutch...
WP_012023931 431 ATIGAKLLDFDFEVGLDVVGFNMKIAGQP-------T-VVVTGNKMNAQCKSVLARAGKGDQVTISEIKTKLVGAGSYLL 502 Flavobacterium ...
WP_005803170 354 MTQLGASISDGPKANYEISSFEMVLIKGSSKA---VTsIPNTGNKFSARQMELIRQLEKGDKFYITSIVVTGPGNKKKQI 430 Bacteroides
WP_011586832 523 KVASTPI 529 Cytophaga hutchinsonii
WP_005874203 509 PAIEVIV 515 Porphyromonas gingivalis
WP_014709418 520 NGRNMEV 526 Prevotella intermedia
WP_011710859 502 KKVAPVV 508 Gramella forsetii
WP_011583581 520 NIGTPif 526 Cytophaga hutchinsonii
WP_012023931 503 PRTAPVI 509 Flavobacterium johnsoniae
WP_005803170 431 ASINVVL 437 Bacteroides
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