Conserved Protein Domain Family
PRK05657

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PRK05657: PRK05657 
RNA polymerase sigma factor RpoS; Validated
Statistics
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PSSM-Id: 235548
Aligned: 151 rows
Threshold Bit Score: 460.576
Created: 9-Dec-2010
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
295676469  12 ESETISe-vTSAAVDESGaseveeEIAEERDLDERQGGLDd---sEGADARESTGDALpdaddfrallqaELTADTIQHY 87 
34499137    1 MSNEID-------------------ILDEDDILDEEGGEE-----NAAEAEAEESSEStav-------feDVVADVTQIY 49 
74316856    1 MSREHSd-eSDDLTPDETe-------------ADEERHAA-----SDSNEELASAILD------------EPQVDVTQLY 49 
300312263   1 MTSNRRd-hLPDQDPREEelddsvDEIDEPEVIDGDAGEE-----------VQEAAPAegvdelkkvlaaELSTDTTQHY 68 
119897381   1 --MEDPv-sSDELESHEPd--------------------------LPLEVEVFAEphap-------vfenDFLSDVTQIY 44 
152980760   1 -MTRNRd-vHAEDDENSDalsselSLQADDDAEKSDITDDdgdavELAERVAPVEVAGidelk--kvlatELSTDATQHY 76 
237653675   1 MEEPVNldeLESQQEPDLppevevFSFQAPPVVEN-----------------------------------EFFSDVTQLY 45 
82701632    1 -------mmNQQEYTDEE------ELFEKEDSLEQDDEAA-----DTPSSAITDTSND------------FLLTDVTQIY 50 
71908137    1 MSDTGEg-lEEEFEGQPDet-----------------------vlPPEPERVLPEIEL--------------LEDVTQLY 42 
134094484   1 MNHNRNaqaDDEENAGAVpvelsfQPVDDEEKADDADQGS-----DDVESHEPEALEVagidelkkvlssELSTDATQHY 75 
295676469  88 LNRISVKPLLTVEEEQKYSRLAKAGEFEARQVMIERNLRLVVSIAKGYLNRGVPLLDLIEEGNLGLMHAIEKFDPTRGFR 167
34499137   50 LNDIGNNALLTPQEELALARRVVAGEFEARQKMIEHNLRLVVNIAKHYINRGLALLDLIEEGNIGLMHALEKFDPERGFR 129
74316856   50 LNEIGQAPLLTAAEEVALARRTVLGDFEARQTMIERNLRLVVNIAKHYANRGLTLLDLVEEGNLGLIHALEKFDPERGFR 129
300312263  69 LNKIGAKPLLTAAEELHFATQAKAGEFVARQKMIEHNLRLVVSIAKHYINRGVALLDLIEEGNLGLMRAIDKFEPERGFR 148
119897381  45 LNEIGANPLLSAEEEAALARRVRAGDFDARQTMIERNLRLVVNIAKHYLNRGIPLLDLVEEGNLGLMHALEKFDPERGFR 124
152980760  77 LNQIGTRPLLTVPEEVHFATLAKQGNFAARQKMIEHNLRLVVSIAKHYINRGVILLDLIEEGNLGLMRAIDKFEPERGFR 156
237653675  46 LNEIGANPLLTAEEELVIARRVRMGDFDARQTMIERNLRLVVNIAKHYLNRGIPLLDLVEEGNLGLMHALEKFDPERGFR 125
82701632   51 FNEIGHNALLTPKEEAELTRRVRQNDFAARQKMIECNLRLVVNIAKHYTNHGVALLDLIEEGNMGMMHALDKFDPERGFR 130
71908137   43 LSEIGAKPLLTPAEELATSRLVREGDFSARQRMIEHNLRLVVNIAKHYLNRGIPLLDLIEEGNLGLIHALEKFDPERGFR 122
134094484  76 LNQIGARPLLTVPEEVHFATLAKQGNFAARQKMIEHNLRLVVSIAKHYINRGVVLLDLIEEGNLGLMRAIDKFEPERGFR 155
295676469 168 FSTYATWWIRQSIERAIMNQARTVRLPVHVIRELNQVLRAKRHLEKNsmnsgeaaERRDASIDDIAYLTGKTTDEVTDIL 247
34499137  130 FSTYATWWIRQSIERAIMNQSRTIRLPVHVIKELNVYLRASRHLESQ--------IGREPSVEEIAHLVGKPVEDVRKVL 201
74316856  130 FSTYATWWIRQNIERAIMNQSRTIRLPVHIIKELNIYLRAQRHLETH--------GVTDATSDDIAALTGHPVADVRRIM 201
300312263 149 FSTYATWWIRQSIERAIMNQARTVRLPVHMVRELNQILRAKYHLEAQq------rDGRDASAEDIAHLVDRPVEEVQDVL 222
119897381 125 FSTYATWWIRQNIERAIMNQSRTIRLPVHVVKELNQVLRAQRVVEAA--------SNGDFSLDEIARRLDKPIEEVRAIL 196
152980760 157 FSTYATWWIRQSIERAIMNQARTVRLPVHVVRELNQTLRAKFHLEAQh------hDGKDATAEDIAHLVDRSVEDVQDIL 230
237653675 126 FSTYATWWIRQNIERAIMNQSRTIRLPVHVVKELNQVLRAQRHIEAD--------CNGESSLEQIANRLGKTIEEVRSIL 197
82701632  131 FSTYATWWIRQNIERCIMNQSRTIRLPVHVIKDLNIILQAARHLEAH--------TGKDPKAEDVAHLLGRTVKEVQRML 202
71908137  123 FSTYATWWIRQNIERGIMNQSRTIRLPVHIVKEINVVLRAMRHLESA--------DKRDSTVERIALLIDRPVADVRRIL 194
134094484 156 FSTYATWWIRQSIERAIMNQARTVRLPVHVVRELNQTLRAKFHLEAQh------hDGKDATAEDIAHLVERSVEDVQDIL 229
295676469 248 ALNEHTASLDAPLDLDPASSLLDLLSDDQSQSPDAEVQHRELETLTRAWLARLSDKHRHVIERRFGLNHIEPATLEELAD 327
34499137  202 NLNERMASLDAPLDIDPMLSIGESIPDEQHEEPELQLHNSQLEMFVHDWLSQLNEKQRLVIERRYGLNGYEICTLEELAA 281
74316856  202 QLNERIASLDAPLDVDPTLSLGEAIADDNAHLPDEMLQLEEIENHVQEWLTQLNDKQRWVIERRFGLNGCEACTLEDLAL 281
300312263 223 ALSEHAASLDTPLDNDPQASLMDLLPSAVEEHPDTRAESQEMAVLIREWLKSLSEKQRVVVARRFGLDNDDPSTLEQLAS 302
119897381 197 ALSEHTASLDAPLDIDPTLSIGESLADEHAETPESQIHNAEIEGLIRAWIDMLNDKQRLVIRHRYGIGECELMTLEELAA 276
152980760 231 ALSEHATSLDAPLDGDPQSSLMDLLQGDHANDPDALAEHNEMTVLVHDWLEKLPDKQRLVITRRFGLDNDDPATLEALAA 310
237653675 198 ALGEHTASLDAPLDIDPSLSIGESLADEQHISADLRIQCSEVEQLVREWLAILNDKQRMVIRHRYGIDECELLTLEELAE 277
82701632  203 SLNQSMMSLDAPLDVDPLLSIGDAIADDQSPGPDLMWEQSEIKGRVQDWLNRLNDKQRYIIEQRYGLNGYETQTLEQLAA 282
71908137  195 SLNEHIASLDAPLEIDPNHTMAEVIADDGESDPESLLQSSEVGSLVDDWLEQLTERQRSVIERRYGLSGADLATLDVIAC 274
134094484 230 ALSEHASSLDAPLDGDPQSSLMDLLQGDHANDPDVLAEHQEMIVLVRDWLDKLSDKQRLVITRRFGLDNDDPATLEELAT 309
295676469 328 EMGLTRERVRQIQQEALVRLKRFFASNGVRKDAVL 362
34499137  282 SLNLTRERVRQIQIEGLEQLRRILRRKGISRDFLL 316
74316856  282 ELEVTRERVRQIQMESLRVLRQLLRRRGVTKDELF 316
300312263 303 EMGITRERVRQVQQEALIKLKRLLTSRGVGRDALF 337
119897381 277 RLELTRERVRQIQLEALGQLRRILKRRGISRDVLF 311
152980760 311 EMHVTRERVRQIQQEALVKLKRSLMRTGVGKDSLL 345
237653675 278 RLELTRERVRQIQLEALGQLRRILRRRGISRDALL 312
82701632  283 SLDLTRERVRQIQLEALQTLRMILRCEGVSKEGVF 317
71908137  275 DLGLTRERVRQIQMEGLDRLRKIIKRGNISRDSLL 309
134094484 310 EMHVTRERVRQIQQEALVKLKRSLARTGVSKDSLL 344
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