1WFW


Conserved Protein Domain Family
SH3_Kalirin_2

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cd11853: SH3_Kalirin_2 
Click on image for an interactive view with Cn3D
Second Src homology 3 domain of the RhoGEF kinase, Kalirin
Kalirin, also called Duo, Duet, or TRAD, is a large neuronal dual Rho guanine nucleotide exchange factor (RhoGEF) that activates Rac1, RhoA, and RhoG using two RhoGEF domains. Kalirin exists in many isoforms generated by alternative splicing and the use of multiple promoters; the major isoforms are kalirin-7, -9, and -12, which differ at their C-terminal ends. Kalirin-12, the longest isoform, contains an N-terminal Sec14p domain, spectrin-like repeats, two RhoGEF domains, two SH3 domains, as well as Ig, FNIII, and kinase domains at the C-terminal end. Kalirin-7 contains only a single RhoGEF domain and does not contain an SH3 domain. Kalirin, through its many isoforms, interacts with many different proteins and is able to localize to different locations within the cell. It influences neurite initiation, axon growth, dendritic morphogenesis, vesicle trafficking, neuronal maintenance, and neurodegeneration. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies.
Statistics
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PSSM-Id: 212787
Aligned: 8 rows
Threshold Bit Score: 111.763
Created: 7-Nov-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide ligand
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide ligand binding site [polypeptide binding site]
Evidence:
  • Comment:based on the binding of peptide ligands to the SH3 domains of other superfamily members
  • Comment:SH3 domains typically bind proline-rich ligands, preferentially to PxxP motifs.
  • Citation:PMID 7664083
  • Citation:PMID 7735837
  • Comment:flanking hinge and loops (RT and n-Src) confer sequence specificity for ligand residues outside the core binding motif

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              # #  #   #                 ##                  # ##   
1WFW_A          9 TMTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSILAP 67   house mouse
6808428       308 SMAVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSILAP 366  human
O75962       2555 TMLVTHDYTAVKEDEINVYQGEVVQILASNQQNMFLVFRAATDQCPAAEGWIPGFVLGH 2613 human
Q1LUA6       2484 TMLVTQDYVALKEDEINVGQGEVVQILASNQQNMFLVFRAATEQCPAAEGWIPGYVLGH 2542 zebrafish
XP_002598611 1532 ELDVKQSYTAIKEDEITVFKGELVQILATNQHNMFLVHRAATEESPAAEGWIPGDVLGC 1590 Florida lancelet
XP_783478    2250 MAPIVEDYAAEKEDEICVSKGEVVQILAANQHNMFLVYRAADKQSPAIEGWIPGEVLNF 2308 purple urchin
XP_002737013  726 YVPVIMNYSAVKEDEISVQKSEIVQILAANQYSMYLVHRPANQLSPAAEGWIPGYVLGH 784  Saccoglossus kowalevskii
NP_001121262  590 SMVVVQDYYALKENEICVYHGEIVQILAINQQNMFLVFRPSNNHSPAAEGWIPGSVLGH 648  African clawed frog

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