4AE4,1WGN


Conserved Protein Domain Family
UBA1_UBAP1

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cd14315: UBA1_UBAP1 
Click on image for an interactive view with Cn3D
UBA1 domain found in vertebrate ubiquitin-associated protein 1 (UBAP-1)
UBAP-1, also called nasopharyngeal carcinoma-associated gene 20 protein, is a ubiquitously expressed protein that may play an important role in the ubiquitin pathway and cell progression. It co-localizes with TDP-43 proteins in neuronal cytoplasmic inclusions and acts as a genetic risk factor for frontotemporal lobar degeneration (FTLD). Moreover, UBAP-1, together with VPS37A, forms an endosome-specific endosomal sorting complexes I required for transport (ESCRT-I) complex that displays a restricted cellular function, ubiquitin-dependent endosomal sorting and multivesicular body (MVB) biogenesis. UBAP-1 contains an N-terminal UBAP-1-MVB12-associated (UMA) domain, and two tandem ubiquitin-associated (UBA) domains that may be responsible for the binding of ubiquitin-conjugating enzymes. This model corresponds to UBA1 domain.
Statistics
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PSSM-Id: 270500
Aligned: 6 rows
Threshold Bit Score: 80.2834
Created: 23-Jul-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
polypeptide
Conserved site includes 7 residues -Click on image for an interactive view with Cn3D
Feature 1:polypeptide substrate binding site [polypeptide binding site]
Evidence:
  • Structure:4AE4; Homo sapiens UBAP-1 in complex with ubiquitin through a solenoid of overlapping UBAs (SOUBA) domain, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         ###   #                      ##  #        
4AE4_A         4 XSPSERQCVETVVNXGYSYECVLRAXKAAGANIEQILDYLFAH 46  human
1WGN_A        15 LSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAH 57  human
NP_001087386 371 LSSSERQCVETIVGMGYSYEQVMRAMQKRGQNVEQVLEYLFIQ 413 African clawed frog
NP_956508    182 LSPSERQCVETIVGMGYSYEGVLKAMQRQGQNVEQVLEYLFTH 224 zebrafish
XP_429204    390 LSASERQCVETVVNMGYSPENVLKAMKKKGQNIDQVLDYLFAH 432 chicken
AFJ51895     386 LTSSEREYLEIVVGMGYSYEDVLKAMKRKGQSIDQILEYLVVR 428 eastern diamondback rattlesnake

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