1Z0A,2A5J


Conserved Protein Domain Family
Rab2

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cd01866: Rab2 
Click on image for an interactive view with Cn3D
Rab GTPase family 2 (Rab2)
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Statistics
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PSSM-Id: 206658
Aligned: 20 rows
Threshold Bit Score: 318.213
Created: 6-Jan-2012
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 13 residues -Click on image for an interactive view with Cn3D
Feature 1:GTP/Mg2+ binding site [chemical binding site]
Evidence:
  • Comment:The active conformation of Rab is stabilized by interations between the gamma phosphate of GTP and two critically conserved residues, Thr in switch I and Gly in switch II
  • Structure:2A5J: Human Rab2b binds GDP and Mg2+, defined using 3.5 A contacts

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                  ######           #                                                 
1Z0A_D      7 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 86  human
2A5J_A     18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 97  human
AAG12240    6 YNYLFKYIVVGDTAVGKSCLLLQFTEQRFQNAHDMTVGVEYGTRTIEVGGKKIKAQIWDTCGQESFRSITRSYYRGSCCA 85  Giardia intestinalis
AAP85298    4 YKYLFKYIIIGDTGVGKSCLLLRFTDKRFKPDHDLTIGVEFGTRLINVKGDTIKLQIWDTAGQESFRSITRSYYRGAAGA 83  Babesia bovis
P49103      3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82  Zea mays
Q39570      3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 82  Chlamydomonas rein...
AAP13359    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82  thale cress
XP_629685   2 YSFLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKAIKLQIWDTAGQESFRSITRSYYRGSAGA 81  Dictyostelium disc...
EAN80470    4 HHYVFKYIIIGDSGVGKSCLLLQFTDKRFEPLHDLTIGVEFGARVVTIKEKNIKLQIWDTAGQESFRSITRSYYRGACGA 83  Trypanosoma brucei
BAD82837   51 YQYVFKYVIVGEVAVGKSCLLLQFQDKRFQPIHDLTIGVEFGTKTIPIQGQSVKLQIWDTAGSEKFRSITRSYYRGASGA 130 Entamoeba histolytica
Feature 1                                         ## #                          ###           
1Z0A_D     87 LLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLesrREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFIN 166 human
2A5J_A     98 LLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLesrRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFIN 177 human
AAG12240   86 LLVYDITRRASFEHVANWLEECRTYGGDKTTILLVGNKTDRessRMVTYDEGEKFAKENNLFFIETSAKTNSNVEEAFMI 165 Giardia intestinalis
AAP85298   84 LLVFDISRRSTFEHLTRWLDEVKDHGSPTMTIVLIGNKTDVn-kREVEYHEGKAFADENNLIYMETSAKGDYNVEEAFLT 162 Babesia bovis
P49103     83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLshrRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVK 162 Zea mays
Q39570     83 LLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLthrRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFIN 162 Chlamydomonas rein...
AAP13359   83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLahrRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 thale cress
XP_629685  82 LLVYDITRRDTFNHLTCWLKDARSYANSNMTIILIGNKSDMeskRAVSYEEGRQFADENGLIFLETSAKTASNVEEAFVN 161 Dictyostelium disc...
EAN80470   84 LLVYDVTRRDTFTHLQTWLEDARSNANTAIVIMLIGNKCDLekkREVSREEGEAFARKHNLVFMETSAKTAQNVDDAFLK 163 Trypanosoma brucei
BAD82837  131 LLVYDISRKESFEKIPIWLEECRKYSNPNTTIMLVGNKCDLp-dRQVTKEEGEAFAKENGLLFLEASARDATNVDNCFLQ 209 Entamoeba histolytica
Feature 1             
1Z0A_D    167 TAKEIYEK 174 human
2A5J_A    178 TAKEIYRK 185 human
AAG12240  166 IAKAVLDK 173 Giardia intestinalis
AAP85298  163 TATMIYDN 170 Babesia bovis
P49103    163 TAGAIYKK 170 Zea mays
Q39570    163 TAKEIYKK 170 Chlamydomonas reinhardtii
AAP13359  163 TAATIYKK 170 thale cress
XP_629685 162 TASKIYEK 169 Dictyostelium discoideum AX4
EAN80470  164 TAAMIYDN 171 Trypanosoma brucei
BAD82837  210 TAEVIFEN 217 Entamoeba histolytica

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