1XVW,1XXU


Conserved Protein Domain Family
PRX_AhpE_like

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cd03018: PRX_AhpE_like 
Click on image for an interactive view with Cn3D
Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Statistics
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PSSM-Id: 239316
Aligned: 24 rows
Threshold Bit Score: 179.392
Created: 21-Jul-2005
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
catalytic triaddimer interface
Conserved site includes 3 residues -Click on image for an interactive view with Cn3D
Feature 1:catalytic triad [active site]
Evidence:
  • Comment:Deprotonation of the catalytic cysteine thiol is facilitated by H-bonding with the threonine or serine hydroxyl group, and the positive charge of the arginine sidechain.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                 #  #                                  
1XVW_B        9 LNVGATAPDFTLRDQn--QQLVTLRGYRgaKNVLLVFFPLAFTGIXQGELDQLRDHLPEFenddSAALAISVGPPPTHKI 86  Mycobacterium tu...
1XXU_B        2 LNVGATAPDFTLRDQn--QQLVTLRGYRgaKNVLLVFFPLAFTGICQGELDQLRDHLPEFenddSAALAISVGPPPTHKI 79  Mycobacterium tu...
CAB92845      3 IQVGDKAPDFELKDNh--GATVRLSEFRgrKNVVLLFYPFAFTGVCTGELCEVRDNLPQFsdrdTEVLAVSNDSIHTLRV 80  Streptomyces coe...
YP_062214     3 LENDTQAPDFELPNQh--GQAVRLSDFRgrKAVTIVFFPLAFSGTCTGELCELRDNLALFedhrVELLAVSVDSKFTLRA 80  Leifsonia xyli s...
NP_789443     6 LPKGSFAPDFELVDQn--GATVVLSEVAakKDVVLFFFPLAFSGICTDELIQVRDSLDSFk--sFEVFALSVDSKFTLRA 81  Tropheryma whipp...
ZP_00294095   3 IEVGQNAPDFELADQh--GQTVRLSDFRgrSRVAVVFYPLAFSGICDKELRQLHECMSEFtarsVQPLAISVDSMFAHRV 80  Thermobifida fusca
AAV45542      2 VSVGDVAPDFTAPIAngdVDEITLSEALddGPVVLAFFPGAFTSVCSHEMNSFQDRLDELteagATLYGVSIDTPFSQNA 81  Haloarcula maris...
AAV48133      2 VSTGDTAPDISATIAngeVEDFELSDHLgdGPVVLAFFPGAFTPPCSNEMVALQEHLGDFhdagATVLGLSADSAFSLNS 81  Haloarcula maris...
ZP_00412844  19 PEVGDLAPDFELVNQy--GEPVRLSELRg-RNVVVVFYPFAFSGICTGELCEIRDNLSLFedanATVLALSVDSKFTVRA 95  Arthrobacter sp....
NP_394824     3 VKVGDKAPDFEAPDTn--LKMRKLSDFKg-QKVVLAFFPGAITSVCTKEMCTFRDSMANFnkvnAKVIGISVDSPFSLAE 79  Thermoplasma aci...
Feature 1                                                 #                                  
1XVW_B       87 WATQsgfTFPLLSDFwphGAVSQAYGVFNEQa------GIANRGTFVVDRsGIIRFAEMKqpgevRDQRLWTDALAA 157 Mycobacterium tuber...
1XXU_B       80 WATQsgfTFPLLSDFwphGAVSQAYGVFNEQa------GIANRGTFVVDRsGIIRFAEMKqpgevRDQRLWTDALAA 150 Mycobacterium tuber...
CAB92845     81 FAEQeglEYPLLSDFwphGNVSRAYGVFDEDk------GCAVRGTFVIDQeGVVRWTVVNalpdaRDLAEYVKALDA 151 Streptomyces coelic...
YP_062214    81 WEEHegyGFSLLADFwphGGIAKEYGVFLPEk------GFANRATFVIDEsGIIRASFITapgraRSIDTYRTALDL 151 Leifsonia xyli subs...
NP_789443    82 YSESqgfSFALLSDFwphGGVAKQFGAFLEDv------GVASRSTFIVGRdLKIKASFFSgihepRDFSEIRAALAS 152 Tropheryma whipplei...
ZP_00294095  81 WADRegvDFPLLSDFwphGAVAQRYGVFDETk------GVALRGSFLIDTeGVVRWKVVNptfqgRDMDDYRQAFAD 151 Thermobifida fusca
AAV45542     82 FRDElglEFDLVSDSg--REIVDSYDISMDFeal-gvpNVAKRAVFVIDEnQEVTYAWVSdd--pGVEPDYDEVIDA 153 Haloarcula marismor...
AAV48133     82 FRDEhglEFDLLSDMg--RSAIQDYGLEIDIedl-gllGVANRAVFVVDDdGEVAYSWVAdd--pTNEPDYDELLDA 153 Haloarcula marismor...
ZP_00412844  96 YAEKegyGFDLLADFwphGAVAAQYGVFDPNs------GMAQRGTFIIDAdGIIRYVVVNprgqaRDLAAYRAALSE 166 Arthrobacter sp. FB24
NP_394824    80 FAKKnnlTFDLLSDSn--REISKKYGVLHENfvnvpglTASKRSVFVIDKdGIVRYAWVSdd--pGKEPNYKEVQDF 152 Thermoplasma acidop...

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