2DH9,2DGV


Conserved Protein Domain Family
RRM3_hnRNPM

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cd12661: RRM3_hnRNPM 
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RNA recognition motif 3 (RRM3) found in vertebrate heterogeneous nuclear ribonucleoprotein M (hnRNP M)
This subgroup corresponds to the RRM3 of hnRNP M, a pre-mRNA binding protein that may play an important role in the pre-mRNA processing. It also preferentially binds to poly(G) and poly(U) RNA homopolymers. Moreover, hnRNP M is able to interact with early spliceosomes, further influencing splicing patterns of specific pre-mRNAs. hnRNP M functions as the receptor of carcinoembryonic antigen (CEA) that contains the penta-peptide sequence PELPK signaling motif. In addition, hnRNP M and another splicing factor Nova-1 work together as dopamine D2 receptor (D2R) pre-mRNA-binding proteins. They regulate alternative splicing of D2R pre-mRNA in an antagonistic manner. hnRNP M contains three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and an unusual hexapeptide-repeat region rich in methionine and arginine residues (MR repeat motif).
Statistics
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PSSM-Id: 410062
Aligned: 7 rows
Threshold Bit Score: 160.812
Created: 14-Sep-2011
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2DH9_A         7 GIFVRNLPFDfTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFEsPEVAERACRMMNGmkLSGREIDVRIDRNA 83  human
NP_001026103 633 QIFVRNLPFDfTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVRFEsPEVAERACRMMNGiqLRGREIDVRIDRNA 709 chicken
AAI34826     663 QIFVRNLSFDcTWKMLKDQFGECGHVVYADIKTENGKSKGCGVVRFEsPEVAERACRMMNGakLGGREIDVRMDRNA 739 African clawed frog
2DGV_A        10 QIFVRNLPFDfTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFEsPEVAERACRMMNGmkLSGREIDVRIDRNA 86  human
XP_014340440 554 QIFVRNLPFDfTWKKLKDEFNECGRVQYAEIKMENGKSKGCGVVRFEsPQVAERACRLMNGikLNGREIDVRLDRNA 630 coelacanth
XP_007906496 548 QIFVRNLPYDiSWKMLKDKFSEYGYVHYADIKMENGKSKGCGVVRFEtPEAAERACRMMNGirLYGREIDVRLDRNV 624 elephant shark
NP_001243560 610 QIFVRNLPFDfTWKMLKDTFNSCGMVQYADIKMENGKSKGCGVVRFDnPETAERACRTMNGyrLNGREIDVRIDRNA 686 zebrafish
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