2JXB,2B86


Conserved Protein Domain Family
SH3_Nck2_1

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cd11899: SH3_Nck2_1 
Click on image for an interactive view with Cn3D
First Src Homology 3 domain of Nck2 adaptor protein
Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds neuronal signaling proteins such as ephrinB and Disabled-1 (Dab-1) exclusively. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The first SH3 domain of Nck2 binds the PxxDY sequence in the CD3e cytoplasmic tail; this binding inhibits phosphorylation by Src kinases, resulting in the downregulation of TCR surface expression. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies.
Statistics
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PSSM-Id: 212832
Aligned: 5 rows
Threshold Bit Score: 101.746
Created: 1-Dec-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide ligand
Conserved site includes 13 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide ligand binding site [polypeptide binding site]
Evidence:
  • Structure:2JXB; Interface between the first SH3 domain of human Nck2 and CD3e peptide PPPVPNP within an engineered fusion protein; contacts at 4A.
  • Comment: The first SH3 domain of Nck adaptor proteins preferentially binds the PxxDY motif.
  • Comment:flanking hinge and loops (RT and n-Src) confer sequence specificity for ligand residues outside the core binding motif

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                   #  ## ##               ###           # ####    
2JXB_A        29 TEEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRNAANRTGYVPSNYVERK 86  human
2B86_A         2 TEEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRNAANRTGYVPSNYVERK 59  human
NP_957291      2 TEEVIVIAKWDYTAQQDQELDIRKNERLWLLDDSKTWWRVRNASNRTGYVPSNYVERK 59  zebrafish
NP_001025985   2 TEEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRNAANKTGYVPSNYVERK 59  chicken
NP_001083313   2 TEEVIVIAKWDYTAQQDQELDLRKNERLWLLDDSKTWWRVRNTANKTGYVPSNYVERK 59  African clawed frog

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