2JLO,2JLN,2X79


Conserved Protein Domain Family
SLC-NCS1sbd_Mhp1-like

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cd11483: SLC-NCS1sbd_Mhp1-like 
Click on image for an interactive view with Cn3D
nucleobase-cation-symport-1 (NCS1) transporter Mhp1-like; solute-binding domain
This NCS1 subfamily includes Microbacterium liquefaciens Mhp1, and various uncharacterized NCS1s. Mhp1 mediates the uptake of indolyl methyl- and benzyl-hydantoins as part of a metabolic salvage pathway for their conversion to amino acids. Mhp1 has 12 transmembrane (TM) helices (an inverted topology repeat: TMs1-5 and TMs6-10, and TMs11-12; TMs numbered to conform to the Solute carrier 6 (SLC6) family Aquifex aeolicus LeuT). NCS1s are essential components of salvage pathways for nucleobases and related metabolites; their other known substrates include allantoin, uracil, thiamine, and nicotinamide riboside. NCS1s belong to a superfamily which also contains the solute carrier 5 family sodium/glucose transporters (SLC5s), and SLC6 neurotransmitter transporters.
Statistics
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PSSM-Id: 271376
Aligned: 8 rows
Threshold Bit Score: 575.152
Created: 4-Aug-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Na binding sitesubstrate
Conserved site includes 5 residues -Click on image for an interactive view with Cn3D
Feature 1:Na binding site [ion binding site]
Evidence:
  • Comment:based on the structures of Vibrio parahaemolyticus vSGLT (SLC5), Aquifex aeolicus LeuT (SLC6), and the NCS1, Microbacterium liquefaciens Mhp1, bound with Na+, functional studies of Escherichia coli PutP (SLC5) and mammalian NIS (SLC5), and mutational analysis of vSGLT
  • Comment:one of two Na+ binding sites in Aquifex aeolicus LeuT, where it is referred to as the Na binding site 2
  • Structure:2JLN: Microbacterium liquefaciens Mhp1 (in an outward-facing open conformation) binds Na+, contacts at 4.0A
  • Comment:Mhp1 may have a flexible cation specificity

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                      #  #                                              
2JLO_A         8 EARSLLNPSNAPTRYAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSF---QVWQVIVAIAAGCTIAVILLFFTQSAAI 84  Microbacterium ...
2JLN_A         8 EARSLLNPSNAPTRYAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSF---QVWQVIVAIAAGCTIAVILLFFTQSAAI 84  Microbacterium ...
2X79_A         8 EARSLLNPSNAPTRYAERSVGPFSLAAIWFAXAIQVAIFIAAGQXTSSF---QVWQVIVAIAAGCTIAVILLFFTQSAAI 84  Microbacterium ...
YP_001111636   5 SNEVLRNSELLPTTDAQRTMSLADYIILWAGMTINVVAFSLGAQYYDGGrglSPWTMIFVMTIGYGLVTALTAMVGDIGT 84  Desulfotomaculu...
YP_518038      6 RSASLRSPELMPAGKSERTMSLADYFILWAGMTINVVAFSLGAQYYNNGdglSAWTMVFVILIGYGIVTALTALIGDIGT 85  Desulfitobacter...
EFS22811       1 MSINLKNPELLPTKLQDKNLSLMDYTLLWAGMTINIAGFAIGAQLYPNL---SPVMIIAGILVAYIMVTILLVLNGDIGM 77  Fusobacterium s...
EES64679       4 ENEKLRSKELLPTGSKERDMSLFDYIILWAGMTINIVAFSLGAQYYNGGkglSPWTLVCVMLIGYGIVTLFTSLVGDIGT 83  Fusobacterium v...
EGA92486       5 KSLSLRSPELLPTKDSERNLSLWDYTILWAGMTINIVAFSLGAQYFNGGdglSPWMLVLVVFLGYGLVTFLTVLAGDIGT 84  Clostridium sp....
Feature 1                                                                                        
2JLO_A        85 RWGINFTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLT-GFTNLPLWIVIFGAIQVVTTFYGITF 163 Microbacterium ...
2JLN_A        85 RWGINFTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLT-GFTNLPLWIVIFGAIQVVTTFYGITF 163 Microbacterium ...
2X79_A        85 RWGINFTVAARXPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLT-GFTNLPLWIVIFGAIQVVTTFYGITF 163 Microbacterium ...
YP_001111636  85 KYGVPFAAYTRAPFGYKGSYVAGLIRAIPGMYWFGFLTWVGASAINQMLGIIFpGFSNLTLMIILFAAIQIFNTMYGLHA 164 Desulfotomaculu...
YP_518038     86 LYGVPFAVYARAPFGYKGSSIAGLLRAVPALYWFGFQTWVGAAALNYIMEILF-GFSNLTLMIIAFAVFQVVNAMYGLKA 164 Desulfitobacter...
EFS22811      78 TYSIPFAVYMRACFGYKGSIIPGIIRSIPCFFWFGFQTWVGAIALDQIFNMIT-GYSNVTLFILIFAIVQIVNALYGLKA 156 Fusobacterium s...
EES64679      84 KYGVPFAAYIRAPFGYKGANIAGFIRAIPGLYWFGFLTWIGAGSLNKIMAIIFpGFDNLMLMIIIFAAVQVLNTMYGLKA 163 Fusobacterium v...
EGA92486      85 KYGVPFAVYSRAAFGYKGSFFAGLVRCVPCFYWFGFQTWVGANALNMIMGIMFpSFNNVTLMLILFAAFQIINALFGMEA 164 Clostridium sp....
Feature 1                                                                                        
2JLO_A       164 IRWMNVFASPVLLAMGVYMVYLMLDGADVSLGEVMSMGGENpGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNASRE 243 Microbacterium ...
2JLN_A       164 IRWMNVFASPVLLAMGVYMVYLMLDGADVSLGEVMSMGGENpGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNASRE 243 Microbacterium ...
2X79_A       164 IRWXNVFASPVLLAXGVYXVYLXLDGADVSLGEVXSXGGENpGXPFSTAIXIFVGGWIAVVVSIHDIVKECKVDPNASRE 243 Microbacterium ...
YP_001111636 165 MAKFDWVAIPCLAIMFGAILVASLQKYNITLPDIMATPAEG-QYSLAYAIAGIAGGWITMSLNGSDLSRQIKRVDGYEKK 243 Desulfotomaculu...
YP_518038    165 MAKFDWIAIPALAILFVAIAIAIGNAYGVTVTDIMATKGNG-NMSVIYAISGIAGGWITMALNGSDLARQIEHVPNYEKK 243 Desulfitobacter...
EFS22811     157 MAKFDWIAIPLLAIVLGGTMFWLLKSHNASFLEILNAPSEN-NYPFMFAVMGIAGGWITMALNSPDLTRQLKRDKNFENK 235 Fusobacterium s...
EES64679     164 MAKFGWIAIPSLAVMFTAILIGTLNKYNITIPEIMSIETEG-GYSFAFAIAGIAGGWLTMALNGSDLTRQIKRYENYENM 242 Fusobacterium v...
EGA92486     165 MAKFDWIAVPMLGIMFAAIVVTVCSKYGVSIPDIMGVQAAG-NYSMAFAISGIAGGWITMALNGPDLARQIKRSDNYKNE 243 Clostridium sp....
Feature 1                                                                         #  ##          
2JLO_A       244 GqtkaDARYATAQWLGMVPASIIFGFIGAASMVLVGEWNPVIAITEVVGgvSIPMAILFQVFVLLATWSTNPAANLLSPA 323 Microbacterium ...
2JLN_A       244 GqtkaDARYATAQWLGMVPASIIFGFIGAASMVLVGEWNPVIAITEVVGgvSIPMAILFQVFVLLATWSTNPAANLLSPA 323 Microbacterium ...
2X79_A       244 GqtkaDARYATAQWLGXVPASIIFGFIGAASXVLVGEWNPVIAITEVVGgvSIPXAILFQVFVLLATWSTNPAANLLSPA 323 Microbacterium ...
YP_001111636 244 GffarNQRSIIGQVVGLMMVGIGTMLVGVVTGITSGYWDLNQVIPDLFQ--SKTVLILSFLVIMFAQWSTNTAANLLPPT 321 Desulfotomaculu...
YP_518038    244 GllarNKRALIGQFFGLMVIGVICMLIGMAAGITTGEWDLNAICVKLFD--SNFGLILALIAVVFAQWSTNTVGNLMPPS 321 Desulfitobacter...
EFS22811     236 NffirNRNAIIAQILGLVIVGALILIVGMTAGILTGVWNPIDVIIATFGtsNPIILVFSFLTIIFAQWSTNTAANLMPPA 315 Fusobacterium s...
EES64679     243 NffqrNKRAIFGQVVGLMIVGVVTMLIGVASGITSGFWDLNDVVPDLFAn-NNITLILCFIVIVFAQWSTNTAANLLPPA 321 Fusobacterium v...
EGA92486     244 GlvkrNKNAILGQLVGLMAVGIIAMMVGMAAGIYTHEWDLNNVVYSLFSn-NMVVLVFCFIAIAFAQWSTNTAANLMPPA 322 Clostridium sp....
Feature 1                                                                                        
2JLO_A       324 YTLCSTFPRvFTFKTGVIVSAVVGLLMMPWQFAGV---LNTFLNLLASALGPLAGIMISDYFLVRRRRISLHDLYRTKGI 400 Microbacterium ...
2JLN_A       324 YTLCSTFPRvFTFKTGVIVSAVVGLLMMPWQFAGV---LNTFLNLLASALGPLAGIMISDYFLVRRRRISLHDLYRTKGI 400 Microbacterium ...
2X79_A       324 YTLCSTFPRvFTFKTGVIVSAVVGLLXXPWQFAGV---LNTFLNLLASALGPLAGIXISDYFLVRRRRISLHDLYRTKGI 400 Microbacterium ...
YP_001111636 322 LVLLNIFPK-LKYWMSAVICGVISVGMMPWKLQSQggfLVMVQAWISQMLGPIIGILLVDYFLIRKCKLNVRDLYVAEGQ 400 Desulfotomaculu...
YP_518038    322 YVLISIFPK-LNFKVASIICGVIAVAMQPWKIQNSgtfLVDMQVYISTMLGPVMGILLADYFIIRKCKLNVQDLYTAGGQ 400 Desulfitobacter...
EFS22811     316 YILMNIFPK-LNFKYSVIISGIIGTIILPWKFSAY---LVQFQVISSGLLGPIVGIMIADYYFIRKRKLNVRDLYKENGE 391 Fusobacterium s...
EES64679     322 LVLLNFSPK-IKYWMSTIICGTISIGIMPWKIQSSggfLVDIQSWISQMLGPIIGIILTDYFIIRKCQLNVKDLYTAGGQ 400 Fusobacterium v...
EGA92486     323 YILLNIFPK-CKFWMTTIISGVIGLLMMPWKQQGGd-fLVVIQSNFSTLLGPIIGIMLADYFLVRKCTLNVDDLYNVGGQ 400 Clostridium sp....
Feature 1                                                                
2JLO_A       401 YTYWRGVNWVALAVYAVALAVSFLTPDLMFVTGLIAALLLHIPAMRWVAKTFPLFS 456 Microbacterium liquefaciens
2JLN_A       401 YTYWRGVNWVALAVYAVALAVSFLTPDLMFVTGLIAALLLHIPAMRWVAKTFPLFS 456 Microbacterium liquefaciens
2X79_A       401 YTYWRGVNWVALAVYAVALAVSFLTPDLXFVTGLIAALLLHIPAXRWVAKTFPLFS 456 Microbacterium liquefaciens
YP_001111636 401 YQYTNGFNISAMVTIVVSFFVGLLCGDYAFFAGLACSAVLYYVLMKAFTLKKYNQH 456 Desulfotomaculum reducens MI-1
YP_518038    401 YQYNNGFNMSAVIALVAGFGLSFISSTYAFFIGLLVAPVVYVVLMKNFTMKKHDQK 456 Desulfitobacterium hafniense Y51
EFS22811     392 YKYKNNYNPAAVLALVISFLVSLFLPNYSFFIGFILSIILYIIFMKTFVLKKYTQS 447 Fusobacterium sp. D12
EES64679     401 YEYTNGYNISAIIALFIAFFIGLLFGDYAFFVGSIVSVIVYYVLMKCITLKKYNQN 456 Fusobacterium varium ATCC 27725
EGA92486     401 YQYTRGFNMSSVVTMVVSFGLSLLAGDYSFFAGLAISVVIYVILMKNFTLKKYDQK 456 Clostridium sp. 7_3_54FAA

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