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dbVar

Database of genomic structural variation

nsv2974

Organism: Homo sapiens

Study:nstd2 (Kidd et al. 2008)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:NCBI35 (hg17)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:97,961

Publication(s):Kidd et al. 2008

Links to Other Resources

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 376 SVs from 59 studies. See in: genome view

Remapped(Score: Perfect):151,544,981-151,642,941

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
nsv2974	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000002.12	Chr2	151,544,981	151,642,941
nsv2974	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000002.11	Chr2	152,401,495	152,499,455
nsv2974	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000002.9	Chr2	152,227,003	152,324,963

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv2299	deletion	NA18555	Sequencing	Paired-end mapping	1,472
nssv4471	deletion	NA12878	Sequencing	Paired-end mapping	1,451

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Outer Stop
nssv2299	Remapped	Perfect	NC_000002.12:g.(15 1544981_?)_(?_1515 95946)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	151,544,981	151,595,946
nssv4471	Remapped	Perfect	NC_000002.12:g.(15 1593688_?)_(?_1516 42941)del	GRCh38.p12	First Pass	NC_000002.12	Chr2	151,593,688	151,642,941
nssv2299	Remapped	Perfect	NC_000002.11:g.(15 2401495_?)_(?_1524 52460)del	GRCh37.p13	First Pass	NC_000002.11	Chr2	152,401,495	152,452,460
nssv4471	Remapped	Perfect	NC_000002.11:g.(15 2450202_?)_(?_1524 99455)del	GRCh37.p13	First Pass	NC_000002.11	Chr2	152,450,202	152,499,455
nssv2299	Submitted genomic		NC_000002.9:g.(152 227003_?)_(?_15227 7968)del10938	NCBI35 (hg17)		NC_000002.9	Chr2	152,227,003	152,277,968
nssv4471	Submitted genomic		NC_000002.9:g.(152 275710_?)_(?_15232 4963)del9524	NCBI35 (hg17)		NC_000002.9	Chr2	152,275,710	152,324,963

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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