nsv878052
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:17
- Validation:Not tested
- Clinical Assertions: No
- Region Size:30,312
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 167 SVs from 29 studies. See in: genome view
Overlapping variant regions from other studies: 167 SVs from 29 studies. See in: genome view
Overlapping variant regions from other studies: 60 SVs from 14 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv878052 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 183,972,477 | 183,973,663 | 183,996,679 | 184,002,788 |
| nsv878052 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000003.11 | Chr3 | 183,690,265 | 183,691,451 | 183,714,467 | 183,720,576 |
| nsv878052 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000003.10 | Chr3 | 185,172,959 | 185,174,145 | 185,197,161 | 185,203,270 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1544577 | copy number loss | MS16387 | SNP array | SNP genotyping analysis | 7 |
| nssv1547489 | copy number loss | MS17399 | SNP array | SNP genotyping analysis | 8 |
| nssv1550614 | copy number loss | MS18487 | SNP array | SNP genotyping analysis | 7 |
| nssv1555898 | copy number loss | MS21706 | SNP array | SNP genotyping analysis | 15 |
| nssv1556248 | copy number loss | MS21868 | SNP array | SNP genotyping analysis | 44 |
| nssv1556678 | copy number loss | MS22109 | SNP array | SNP genotyping analysis | 12 |
| nssv1562718 | copy number loss | MS25710 | SNP array | SNP genotyping analysis | 10 |
| nssv1564038 | copy number loss | IS30147 | SNP array | SNP genotyping analysis | 16 |
| nssv1577821 | copy number loss | IS34573 | SNP array | SNP genotyping analysis | 23 |
| nssv1578950 | copy number loss | IS34996 | SNP array | SNP genotyping analysis | 22 |
| nssv1581706 | copy number loss | IS35701 | SNP array | SNP genotyping analysis | 38 |
| nssv1584413 | copy number loss | IS36990 | SNP array | SNP genotyping analysis | 19 |
| nssv1589632 | copy number loss | IS38390 | SNP array | SNP genotyping analysis | 17 |
| nssv1596557 | copy number loss | IS40568 | SNP array | SNP genotyping analysis | 6 |
| nssv1596836 | copy number loss | IS40657 | SNP array | SNP genotyping analysis | 40 |
| nssv1597067 | copy number loss | IS40729 | SNP array | SNP genotyping analysis | 20 |
| nssv1600266 | copy number loss | IS41866 | SNP array | SNP genotyping analysis | 24 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1544577 | Remapped | Perfect | NC_000003.12:g.(18 3972477_183973663) _(183996679_184002 788)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 183,972,477 | 183,973,663 | 183,996,679 | 184,002,788 |
| nssv1547489 | Remapped | Perfect | NC_000003.12:g.(18 3972477_183973663) _(183996679_184002 788)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 183,972,477 | 183,973,663 | 183,996,679 | 184,002,788 |
| nssv1550614 | Remapped | Perfect | NC_000003.12:g.(18 3972477_183973663) _(183996679_184002 788)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 183,972,477 | 183,973,663 | 183,996,679 | 184,002,788 |
| nssv1555898 | Remapped | Perfect | NC_000003.12:g.(18 3972477_183973663) _(183996679_184002 788)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 183,972,477 | 183,973,663 | 183,996,679 | 184,002,788 |
| nssv1556248 | Remapped | Perfect | NC_000003.12:g.(18 3972477_183973663) _(183996679_184002 788)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 183,972,477 | 183,973,663 | 183,996,679 | 184,002,788 |
| nssv1556678 | Remapped | Perfect | NC_000003.12:g.(18 3972477_183973663) _(183996679_184002 788)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 183,972,477 | 183,973,663 | 183,996,679 | 184,002,788 |
| nssv1562718 | Remapped | Perfect | NC_000003.12:g.(18 3972477_183973663) _(183996679_184002 788)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 183,972,477 | 183,973,663 | 183,996,679 | 184,002,788 |
| nssv1564038 | Remapped | Perfect | NC_000003.12:g.(18 3972477_183973663) _(183996679_184002 788)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 183,972,477 | 183,973,663 | 183,996,679 | 184,002,788 |
| nssv1577821 | Remapped | Perfect | NC_000003.12:g.(18 3972477_183973663) _(183996679_184002 788)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 183,972,477 | 183,973,663 | 183,996,679 | 184,002,788 |
| nssv1578950 | Remapped | Perfect | NC_000003.12:g.(18 3972477_183973663) _(183996679_184002 788)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 183,972,477 | 183,973,663 | 183,996,679 | 184,002,788 |
| nssv1581706 | Remapped | Perfect | NC_000003.12:g.(18 3972477_183973663) _(183996679_184002 788)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 183,972,477 | 183,973,663 | 183,996,679 | 184,002,788 |
| nssv1584413 | Remapped | Perfect | NC_000003.12:g.(18 3972477_183973663) _(183996679_184002 788)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 183,972,477 | 183,973,663 | 183,996,679 | 184,002,788 |
| nssv1589632 | Remapped | Perfect | NC_000003.12:g.(18 3972477_183973663) _(183996679_184002 788)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 183,972,477 | 183,973,663 | 183,996,679 | 184,002,788 |
| nssv1596557 | Remapped | Perfect | NC_000003.12:g.(18 3972477_183973663) _(183996679_184002 788)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 183,972,477 | 183,973,663 | 183,996,679 | 184,002,788 |
| nssv1596836 | Remapped | Perfect | NC_000003.12:g.(18 3972477_183973663) _(183996679_184002 788)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 183,972,477 | 183,973,663 | 183,996,679 | 184,002,788 |
| nssv1597067 | Remapped | Perfect | NC_000003.12:g.(18 3972477_183973663) _(183996679_184002 788)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 183,972,477 | 183,973,663 | 183,996,679 | 184,002,788 |
| nssv1600266 | Remapped | Perfect | NC_000003.12:g.(18 3972477_183973663) _(183996679_184002 788)del | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 183,972,477 | 183,973,663 | 183,996,679 | 184,002,788 |
| nssv1544577 | Remapped | Perfect | NC_000003.11:g.(18 3690265_183691451) _(183714467_183720 576)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 183,690,265 | 183,691,451 | 183,714,467 | 183,720,576 |
| nssv1547489 | Remapped | Perfect | NC_000003.11:g.(18 3690265_183691451) _(183714467_183720 576)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 183,690,265 | 183,691,451 | 183,714,467 | 183,720,576 |
| nssv1550614 | Remapped | Perfect | NC_000003.11:g.(18 3690265_183691451) _(183714467_183720 576)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 183,690,265 | 183,691,451 | 183,714,467 | 183,720,576 |
| nssv1555898 | Remapped | Perfect | NC_000003.11:g.(18 3690265_183691451) _(183714467_183720 576)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 183,690,265 | 183,691,451 | 183,714,467 | 183,720,576 |
| nssv1556248 | Remapped | Perfect | NC_000003.11:g.(18 3690265_183691451) _(183714467_183720 576)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 183,690,265 | 183,691,451 | 183,714,467 | 183,720,576 |
| nssv1556678 | Remapped | Perfect | NC_000003.11:g.(18 3690265_183691451) _(183714467_183720 576)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 183,690,265 | 183,691,451 | 183,714,467 | 183,720,576 |
| nssv1562718 | Remapped | Perfect | NC_000003.11:g.(18 3690265_183691451) _(183714467_183720 576)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 183,690,265 | 183,691,451 | 183,714,467 | 183,720,576 |
| nssv1564038 | Remapped | Perfect | NC_000003.11:g.(18 3690265_183691451) _(183714467_183720 576)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 183,690,265 | 183,691,451 | 183,714,467 | 183,720,576 |
| nssv1577821 | Remapped | Perfect | NC_000003.11:g.(18 3690265_183691451) _(183714467_183720 576)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 183,690,265 | 183,691,451 | 183,714,467 | 183,720,576 |
| nssv1578950 | Remapped | Perfect | NC_000003.11:g.(18 3690265_183691451) _(183714467_183720 576)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 183,690,265 | 183,691,451 | 183,714,467 | 183,720,576 |
| nssv1581706 | Remapped | Perfect | NC_000003.11:g.(18 3690265_183691451) _(183714467_183720 576)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 183,690,265 | 183,691,451 | 183,714,467 | 183,720,576 |
| nssv1584413 | Remapped | Perfect | NC_000003.11:g.(18 3690265_183691451) _(183714467_183720 576)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 183,690,265 | 183,691,451 | 183,714,467 | 183,720,576 |
| nssv1589632 | Remapped | Perfect | NC_000003.11:g.(18 3690265_183691451) _(183714467_183720 576)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 183,690,265 | 183,691,451 | 183,714,467 | 183,720,576 |
| nssv1596557 | Remapped | Perfect | NC_000003.11:g.(18 3690265_183691451) _(183714467_183720 576)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 183,690,265 | 183,691,451 | 183,714,467 | 183,720,576 |
| nssv1596836 | Remapped | Perfect | NC_000003.11:g.(18 3690265_183691451) _(183714467_183720 576)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 183,690,265 | 183,691,451 | 183,714,467 | 183,720,576 |
| nssv1597067 | Remapped | Perfect | NC_000003.11:g.(18 3690265_183691451) _(183714467_183720 576)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 183,690,265 | 183,691,451 | 183,714,467 | 183,720,576 |
| nssv1600266 | Remapped | Perfect | NC_000003.11:g.(18 3690265_183691451) _(183714467_183720 576)del | GRCh37.p13 | First Pass | NC_000003.11 | Chr3 | 183,690,265 | 183,691,451 | 183,714,467 | 183,720,576 |
| nssv1544577 | Submitted genomic | NC_000003.10:g.(18 5172959_185174145) _(185197161_185203 270)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 185,172,959 | 185,174,145 | 185,197,161 | 185,203,270 | ||
| nssv1547489 | Submitted genomic | NC_000003.10:g.(18 5172959_185174145) _(185197161_185203 270)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 185,172,959 | 185,174,145 | 185,197,161 | 185,203,270 | ||
| nssv1550614 | Submitted genomic | NC_000003.10:g.(18 5172959_185174145) _(185197161_185203 270)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 185,172,959 | 185,174,145 | 185,197,161 | 185,203,270 | ||
| nssv1555898 | Submitted genomic | NC_000003.10:g.(18 5172959_185174145) _(185197161_185203 270)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 185,172,959 | 185,174,145 | 185,197,161 | 185,203,270 | ||
| nssv1556248 | Submitted genomic | NC_000003.10:g.(18 5172959_185174145) _(185197161_185203 270)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 185,172,959 | 185,174,145 | 185,197,161 | 185,203,270 | ||
| nssv1556678 | Submitted genomic | NC_000003.10:g.(18 5172959_185174145) _(185197161_185203 270)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 185,172,959 | 185,174,145 | 185,197,161 | 185,203,270 | ||
| nssv1562718 | Submitted genomic | NC_000003.10:g.(18 5172959_185174145) _(185197161_185203 270)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 185,172,959 | 185,174,145 | 185,197,161 | 185,203,270 | ||
| nssv1564038 | Submitted genomic | NC_000003.10:g.(18 5172959_185174145) _(185197161_185203 270)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 185,172,959 | 185,174,145 | 185,197,161 | 185,203,270 | ||
| nssv1577821 | Submitted genomic | NC_000003.10:g.(18 5172959_185174145) _(185197161_185203 270)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 185,172,959 | 185,174,145 | 185,197,161 | 185,203,270 | ||
| nssv1578950 | Submitted genomic | NC_000003.10:g.(18 5172959_185174145) _(185197161_185203 270)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 185,172,959 | 185,174,145 | 185,197,161 | 185,203,270 | ||
| nssv1581706 | Submitted genomic | NC_000003.10:g.(18 5172959_185174145) _(185197161_185203 270)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 185,172,959 | 185,174,145 | 185,197,161 | 185,203,270 | ||
| nssv1584413 | Submitted genomic | NC_000003.10:g.(18 5172959_185174145) _(185197161_185203 270)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 185,172,959 | 185,174,145 | 185,197,161 | 185,203,270 | ||
| nssv1589632 | Submitted genomic | NC_000003.10:g.(18 5172959_185174145) _(185197161_185203 270)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 185,172,959 | 185,174,145 | 185,197,161 | 185,203,270 | ||
| nssv1596557 | Submitted genomic | NC_000003.10:g.(18 5172959_185174145) _(185197161_185203 270)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 185,172,959 | 185,174,145 | 185,197,161 | 185,203,270 | ||
| nssv1596836 | Submitted genomic | NC_000003.10:g.(18 5172959_185174145) _(185197161_185203 270)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 185,172,959 | 185,174,145 | 185,197,161 | 185,203,270 | ||
| nssv1597067 | Submitted genomic | NC_000003.10:g.(18 5172959_185174145) _(185197161_185203 270)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 185,172,959 | 185,174,145 | 185,197,161 | 185,203,270 | ||
| nssv1600266 | Submitted genomic | NC_000003.10:g.(18 5172959_185174145) _(185197161_185203 270)del | NCBI36 (hg18) | NC_000003.10 | Chr3 | 185,172,959 | 185,174,145 | 185,197,161 | 185,203,270 |