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dbVar

Database of genomic structural variation

nsv878197

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:3
Validation:Not tested
Clinical Assertions: No
Region Size:147,111

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 765 SVs from 83 studies. See in: genome view

Remapped(Score: Perfect):197,111,615-197,258,725

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv878197	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000003.12	Chr3	197,111,615	197,138,371	197,236,741	197,258,725
nsv878197	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000003.11	Chr3	196,838,486	196,865,242	196,963,612	196,985,596
nsv878197	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000003.10	Chr3	198,322,883	198,349,639	198,448,009	198,469,993

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1564018	copy number loss	IS30146	SNP array	SNP genotyping analysis	19
nssv1581707	copy number loss	IS35701	SNP array	SNP genotyping analysis	38
nssv1585449	copy number gain	IS37458	SNP array	SNP genotyping analysis	13

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1564018	Remapped	Perfect	NC_000003.12:g.(19 7111615_197138371) _(197236741_197258 725)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	197,111,615	197,138,371	197,236,741	197,258,725
nssv1581707	Remapped	Perfect	NC_000003.12:g.(19 7111615_197138371) _(197236741_197258 725)del	GRCh38.p12	First Pass	NC_000003.12	Chr3	197,111,615	197,138,371	197,236,741	197,258,725
nssv1585449	Remapped	Perfect	NC_000003.12:g.(19 7111615_197138371) _(197236741_197258 725)dup	GRCh38.p12	First Pass	NC_000003.12	Chr3	197,111,615	197,138,371	197,236,741	197,258,725
nssv1564018	Remapped	Perfect	NC_000003.11:g.(19 6838486_196865242) _(196963612_196985 596)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	196,838,486	196,865,242	196,963,612	196,985,596
nssv1581707	Remapped	Perfect	NC_000003.11:g.(19 6838486_196865242) _(196963612_196985 596)del	GRCh37.p13	First Pass	NC_000003.11	Chr3	196,838,486	196,865,242	196,963,612	196,985,596
nssv1585449	Remapped	Perfect	NC_000003.11:g.(19 6838486_196865242) _(196963612_196985 596)dup	GRCh37.p13	First Pass	NC_000003.11	Chr3	196,838,486	196,865,242	196,963,612	196,985,596
nssv1564018	Submitted genomic		NC_000003.10:g.(19 8322883_198349639) _(198448009_198469 993)del	NCBI36 (hg18)		NC_000003.10	Chr3	198,322,883	198,349,639	198,448,009	198,469,993
nssv1581707	Submitted genomic		NC_000003.10:g.(19 8322883_198349639) _(198448009_198469 993)del	NCBI36 (hg18)		NC_000003.10	Chr3	198,322,883	198,349,639	198,448,009	198,469,993
nssv1585449	Submitted genomic		NC_000003.10:g.(19 8322883_198349639) _(198448009_198469 993)dup	NCBI36 (hg18)		NC_000003.10	Chr3	198,322,883	198,349,639	198,448,009	198,469,993

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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