nsv884849
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:16
- Validation:Not tested
- Clinical Assertions: No
- Region Size:14,316
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1793 SVs from 86 studies. See in: genome view
Overlapping variant regions from other studies: 1793 SVs from 86 studies. See in: genome view
Overlapping variant regions from other studies: 1193 SVs from 31 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv884849 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 32,486,077 | 32,487,705 | 32,498,447 | 32,500,392 |
| nsv884849 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000006.11 | Chr6 | 32,453,854 | 32,455,482 | 32,466,224 | 32,468,169 |
| nsv884849 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000006.10 | Chr6 | 32,561,832 | 32,563,460 | 32,574,202 | 32,576,147 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1500817 | copy number loss | SP50857 | SNP array | SNP genotyping analysis | 20 |
| nssv1503300 | copy number loss | SP52027 | SNP array | SNP genotyping analysis | 14 |
| nssv1505453 | copy number loss | SP53528 | SNP array | SNP genotyping analysis | 23 |
| nssv1506390 | copy number loss | SP54294 | SNP array | SNP genotyping analysis | 10 |
| nssv1511654 | copy number loss | SP55026 | SNP array | SNP genotyping analysis | 21 |
| nssv1511772 | copy number loss | SP55074 | SNP array | SNP genotyping analysis | 8 |
| nssv1513132 | copy number loss | SP55690 | SNP array | SNP genotyping analysis | 15 |
| nssv1513212 | copy number loss | SP55695 | SNP array | SNP genotyping analysis | 14 |
| nssv1514781 | copy number loss | SP56079 | SNP array | SNP genotyping analysis | 12 |
| nssv1514946 | copy number loss | SP56104 | SNP array | SNP genotyping analysis | 19 |
| nssv1515104 | copy number loss | SP56125 | SNP array | SNP genotyping analysis | 28 |
| nssv1515153 | copy number loss | SP56128 | SNP array | SNP genotyping analysis | 14 |
| nssv1516066 | copy number loss | SP56396 | SNP array | SNP genotyping analysis | 18 |
| nssv1516264 | copy number loss | SP56734 | SNP array | SNP genotyping analysis | 23 |
| nssv1516660 | copy number loss | SP56887 | SNP array | SNP genotyping analysis | 16 |
| nssv1519468 | copy number loss | SP81047 | SNP array | SNP genotyping analysis | 19 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1500817 | Remapped | Perfect | NC_000006.12:g.(32 486077_32487705)_( 32498447_32500392) del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,486,077 | 32,487,705 | 32,498,447 | 32,500,392 |
| nssv1503300 | Remapped | Perfect | NC_000006.12:g.(32 486077_32487705)_( 32498447_32500392) del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,486,077 | 32,487,705 | 32,498,447 | 32,500,392 |
| nssv1505453 | Remapped | Perfect | NC_000006.12:g.(32 486077_32487705)_( 32498447_32500392) del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,486,077 | 32,487,705 | 32,498,447 | 32,500,392 |
| nssv1506390 | Remapped | Perfect | NC_000006.12:g.(32 486077_32487705)_( 32498447_32500392) del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,486,077 | 32,487,705 | 32,498,447 | 32,500,392 |
| nssv1511654 | Remapped | Perfect | NC_000006.12:g.(32 486077_32487705)_( 32498447_32500392) del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,486,077 | 32,487,705 | 32,498,447 | 32,500,392 |
| nssv1511772 | Remapped | Perfect | NC_000006.12:g.(32 486077_32487705)_( 32498447_32500392) del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,486,077 | 32,487,705 | 32,498,447 | 32,500,392 |
| nssv1513132 | Remapped | Perfect | NC_000006.12:g.(32 486077_32487705)_( 32498447_32500392) del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,486,077 | 32,487,705 | 32,498,447 | 32,500,392 |
| nssv1513212 | Remapped | Perfect | NC_000006.12:g.(32 486077_32487705)_( 32498447_32500392) del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,486,077 | 32,487,705 | 32,498,447 | 32,500,392 |
| nssv1514781 | Remapped | Perfect | NC_000006.12:g.(32 486077_32487705)_( 32498447_32500392) del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,486,077 | 32,487,705 | 32,498,447 | 32,500,392 |
| nssv1514946 | Remapped | Perfect | NC_000006.12:g.(32 486077_32487705)_( 32498447_32500392) del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,486,077 | 32,487,705 | 32,498,447 | 32,500,392 |
| nssv1515104 | Remapped | Perfect | NC_000006.12:g.(32 486077_32487705)_( 32498447_32500392) del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,486,077 | 32,487,705 | 32,498,447 | 32,500,392 |
| nssv1515153 | Remapped | Perfect | NC_000006.12:g.(32 486077_32487705)_( 32498447_32500392) del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,486,077 | 32,487,705 | 32,498,447 | 32,500,392 |
| nssv1516066 | Remapped | Perfect | NC_000006.12:g.(32 486077_32487705)_( 32498447_32500392) del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,486,077 | 32,487,705 | 32,498,447 | 32,500,392 |
| nssv1516264 | Remapped | Perfect | NC_000006.12:g.(32 486077_32487705)_( 32498447_32500392) del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,486,077 | 32,487,705 | 32,498,447 | 32,500,392 |
| nssv1516660 | Remapped | Perfect | NC_000006.12:g.(32 486077_32487705)_( 32498447_32500392) del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,486,077 | 32,487,705 | 32,498,447 | 32,500,392 |
| nssv1519468 | Remapped | Perfect | NC_000006.12:g.(32 486077_32487705)_( 32498447_32500392) del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,486,077 | 32,487,705 | 32,498,447 | 32,500,392 |
| nssv1500817 | Remapped | Perfect | NC_000006.11:g.(32 453854_32455482)_( 32466224_32468169) del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,453,854 | 32,455,482 | 32,466,224 | 32,468,169 |
| nssv1503300 | Remapped | Perfect | NC_000006.11:g.(32 453854_32455482)_( 32466224_32468169) del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,453,854 | 32,455,482 | 32,466,224 | 32,468,169 |
| nssv1505453 | Remapped | Perfect | NC_000006.11:g.(32 453854_32455482)_( 32466224_32468169) del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,453,854 | 32,455,482 | 32,466,224 | 32,468,169 |
| nssv1506390 | Remapped | Perfect | NC_000006.11:g.(32 453854_32455482)_( 32466224_32468169) del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,453,854 | 32,455,482 | 32,466,224 | 32,468,169 |
| nssv1511654 | Remapped | Perfect | NC_000006.11:g.(32 453854_32455482)_( 32466224_32468169) del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,453,854 | 32,455,482 | 32,466,224 | 32,468,169 |
| nssv1511772 | Remapped | Perfect | NC_000006.11:g.(32 453854_32455482)_( 32466224_32468169) del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,453,854 | 32,455,482 | 32,466,224 | 32,468,169 |
| nssv1513132 | Remapped | Perfect | NC_000006.11:g.(32 453854_32455482)_( 32466224_32468169) del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,453,854 | 32,455,482 | 32,466,224 | 32,468,169 |
| nssv1513212 | Remapped | Perfect | NC_000006.11:g.(32 453854_32455482)_( 32466224_32468169) del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,453,854 | 32,455,482 | 32,466,224 | 32,468,169 |
| nssv1514781 | Remapped | Perfect | NC_000006.11:g.(32 453854_32455482)_( 32466224_32468169) del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,453,854 | 32,455,482 | 32,466,224 | 32,468,169 |
| nssv1514946 | Remapped | Perfect | NC_000006.11:g.(32 453854_32455482)_( 32466224_32468169) del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,453,854 | 32,455,482 | 32,466,224 | 32,468,169 |
| nssv1515104 | Remapped | Perfect | NC_000006.11:g.(32 453854_32455482)_( 32466224_32468169) del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,453,854 | 32,455,482 | 32,466,224 | 32,468,169 |
| nssv1515153 | Remapped | Perfect | NC_000006.11:g.(32 453854_32455482)_( 32466224_32468169) del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,453,854 | 32,455,482 | 32,466,224 | 32,468,169 |
| nssv1516066 | Remapped | Perfect | NC_000006.11:g.(32 453854_32455482)_( 32466224_32468169) del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,453,854 | 32,455,482 | 32,466,224 | 32,468,169 |
| nssv1516264 | Remapped | Perfect | NC_000006.11:g.(32 453854_32455482)_( 32466224_32468169) del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,453,854 | 32,455,482 | 32,466,224 | 32,468,169 |
| nssv1516660 | Remapped | Perfect | NC_000006.11:g.(32 453854_32455482)_( 32466224_32468169) del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,453,854 | 32,455,482 | 32,466,224 | 32,468,169 |
| nssv1519468 | Remapped | Perfect | NC_000006.11:g.(32 453854_32455482)_( 32466224_32468169) del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,453,854 | 32,455,482 | 32,466,224 | 32,468,169 |
| nssv1500817 | Submitted genomic | NC_000006.10:g.(32 561832_32563460)_( 32574202_32576147) del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,561,832 | 32,563,460 | 32,574,202 | 32,576,147 | ||
| nssv1503300 | Submitted genomic | NC_000006.10:g.(32 561832_32563460)_( 32574202_32576147) del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,561,832 | 32,563,460 | 32,574,202 | 32,576,147 | ||
| nssv1505453 | Submitted genomic | NC_000006.10:g.(32 561832_32563460)_( 32574202_32576147) del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,561,832 | 32,563,460 | 32,574,202 | 32,576,147 | ||
| nssv1506390 | Submitted genomic | NC_000006.10:g.(32 561832_32563460)_( 32574202_32576147) del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,561,832 | 32,563,460 | 32,574,202 | 32,576,147 | ||
| nssv1511654 | Submitted genomic | NC_000006.10:g.(32 561832_32563460)_( 32574202_32576147) del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,561,832 | 32,563,460 | 32,574,202 | 32,576,147 | ||
| nssv1511772 | Submitted genomic | NC_000006.10:g.(32 561832_32563460)_( 32574202_32576147) del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,561,832 | 32,563,460 | 32,574,202 | 32,576,147 | ||
| nssv1513132 | Submitted genomic | NC_000006.10:g.(32 561832_32563460)_( 32574202_32576147) del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,561,832 | 32,563,460 | 32,574,202 | 32,576,147 | ||
| nssv1513212 | Submitted genomic | NC_000006.10:g.(32 561832_32563460)_( 32574202_32576147) del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,561,832 | 32,563,460 | 32,574,202 | 32,576,147 | ||
| nssv1514781 | Submitted genomic | NC_000006.10:g.(32 561832_32563460)_( 32574202_32576147) del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,561,832 | 32,563,460 | 32,574,202 | 32,576,147 | ||
| nssv1514946 | Submitted genomic | NC_000006.10:g.(32 561832_32563460)_( 32574202_32576147) del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,561,832 | 32,563,460 | 32,574,202 | 32,576,147 | ||
| nssv1515104 | Submitted genomic | NC_000006.10:g.(32 561832_32563460)_( 32574202_32576147) del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,561,832 | 32,563,460 | 32,574,202 | 32,576,147 | ||
| nssv1515153 | Submitted genomic | NC_000006.10:g.(32 561832_32563460)_( 32574202_32576147) del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,561,832 | 32,563,460 | 32,574,202 | 32,576,147 | ||
| nssv1516066 | Submitted genomic | NC_000006.10:g.(32 561832_32563460)_( 32574202_32576147) del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,561,832 | 32,563,460 | 32,574,202 | 32,576,147 | ||
| nssv1516264 | Submitted genomic | NC_000006.10:g.(32 561832_32563460)_( 32574202_32576147) del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,561,832 | 32,563,460 | 32,574,202 | 32,576,147 | ||
| nssv1516660 | Submitted genomic | NC_000006.10:g.(32 561832_32563460)_( 32574202_32576147) del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,561,832 | 32,563,460 | 32,574,202 | 32,576,147 | ||
| nssv1519468 | Submitted genomic | NC_000006.10:g.(32 561832_32563460)_( 32574202_32576147) del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,561,832 | 32,563,460 | 32,574,202 | 32,576,147 |