nsv885314
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:24
- Validation:Not tested
- Clinical Assertions: No
- Region Size:15,174
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1809 SVs from 87 studies. See in: genome view
Overlapping variant regions from other studies: 1809 SVs from 87 studies. See in: genome view
Overlapping variant regions from other studies: 1121 SVs from 31 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv885314 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000006.12 | Chr6 | 32,556,447 | 32,556,904 | 32,568,117 | 32,571,620 |
| nsv885314 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000006.11 | Chr6 | 32,524,224 | 32,524,681 | 32,535,894 | 32,539,397 |
| nsv885314 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000006.10 | Chr6 | 32,632,202 | 32,632,659 | 32,643,872 | 32,647,375 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1519838 | copy number gain | SP50573 | SNP array | SNP genotyping analysis | 5 |
| nssv1519881 | copy number gain | SP50597 | SNP array | SNP genotyping analysis | 9 |
| nssv1521002 | copy number gain | SP51377 | SNP array | SNP genotyping analysis | 7 |
| nssv1521222 | copy number gain | SP52297 | SNP array | SNP genotyping analysis | 15 |
| nssv1521255 | copy number gain | SP52318 | SNP array | SNP genotyping analysis | 9 |
| nssv1521463 | copy number gain | SP52379 | SNP array | SNP genotyping analysis | 7 |
| nssv1521612 | copy number gain | SP52458 | SNP array | SNP genotyping analysis | 7 |
| nssv1521795 | copy number gain | SP52579 | SNP array | SNP genotyping analysis | 9 |
| nssv1522998 | copy number gain | SP53550 | SNP array | SNP genotyping analysis | 20 |
| nssv1527472 | copy number gain | SP58443 | SNP array | SNP genotyping analysis | 9 |
| nssv1532176 | copy number gain | MS10729 | SNP array | SNP genotyping analysis | 12 |
| nssv1537533 | copy number gain | MS13240 | SNP array | SNP genotyping analysis | 18 |
| nssv1539094 | copy number loss | MS14157 | SNP array | SNP genotyping analysis | 8 |
| nssv1542820 | copy number gain | MS15915 | SNP array | SNP genotyping analysis | 11 |
| nssv1545865 | copy number loss | MS17014 | SNP array | SNP genotyping analysis | 10 |
| nssv1547293 | copy number loss | MS17305 | SNP array | SNP genotyping analysis | 7 |
| nssv1554129 | copy number loss | MS20627 | SNP array | SNP genotyping analysis | 15 |
| nssv1563218 | copy number gain | MS25902 | SNP array | SNP genotyping analysis | 11 |
| nssv1564676 | copy number loss | IS30280 | SNP array | SNP genotyping analysis | 13 |
| nssv1568286 | copy number loss | IS31228 | SNP array | SNP genotyping analysis | 42 |
| nssv1587341 | copy number loss | IS38012 | SNP array | SNP genotyping analysis | 13 |
| nssv1591170 | copy number loss | IS38648 | SNP array | SNP genotyping analysis | 14 |
| nssv1598683 | copy number loss | IS40956 | SNP array | SNP genotyping analysis | 16 |
| nssv1600623 | copy number loss | IS41906 | SNP array | SNP genotyping analysis | 21 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1519838 | Remapped | Perfect | NC_000006.12:g.(32 556447_32556904)_( 32568117_32571620) dup | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,556,447 | 32,556,904 | 32,568,117 | 32,571,620 |
| nssv1519881 | Remapped | Perfect | NC_000006.12:g.(32 556447_32556904)_( 32568117_32571620) dup | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,556,447 | 32,556,904 | 32,568,117 | 32,571,620 |
| nssv1521002 | Remapped | Perfect | NC_000006.12:g.(32 556447_32556904)_( 32568117_32571620) dup | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,556,447 | 32,556,904 | 32,568,117 | 32,571,620 |
| nssv1521222 | Remapped | Perfect | NC_000006.12:g.(32 556447_32556904)_( 32568117_32571620) dup | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,556,447 | 32,556,904 | 32,568,117 | 32,571,620 |
| nssv1521255 | Remapped | Perfect | NC_000006.12:g.(32 556447_32556904)_( 32568117_32571620) dup | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,556,447 | 32,556,904 | 32,568,117 | 32,571,620 |
| nssv1521463 | Remapped | Perfect | NC_000006.12:g.(32 556447_32556904)_( 32568117_32571620) dup | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,556,447 | 32,556,904 | 32,568,117 | 32,571,620 |
| nssv1521612 | Remapped | Perfect | NC_000006.12:g.(32 556447_32556904)_( 32568117_32571620) dup | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,556,447 | 32,556,904 | 32,568,117 | 32,571,620 |
| nssv1521795 | Remapped | Perfect | NC_000006.12:g.(32 556447_32556904)_( 32568117_32571620) dup | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,556,447 | 32,556,904 | 32,568,117 | 32,571,620 |
| nssv1522998 | Remapped | Perfect | NC_000006.12:g.(32 556447_32556904)_( 32568117_32571620) dup | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,556,447 | 32,556,904 | 32,568,117 | 32,571,620 |
| nssv1527472 | Remapped | Perfect | NC_000006.12:g.(32 556447_32556904)_( 32568117_32571620) dup | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,556,447 | 32,556,904 | 32,568,117 | 32,571,620 |
| nssv1532176 | Remapped | Perfect | NC_000006.12:g.(32 556447_32556904)_( 32568117_32571620) dup | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,556,447 | 32,556,904 | 32,568,117 | 32,571,620 |
| nssv1537533 | Remapped | Perfect | NC_000006.12:g.(32 556447_32556904)_( 32568117_32571620) dup | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,556,447 | 32,556,904 | 32,568,117 | 32,571,620 |
| nssv1539094 | Remapped | Perfect | NC_000006.12:g.(32 556447_32556904)_( 32568117_32571620) del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,556,447 | 32,556,904 | 32,568,117 | 32,571,620 |
| nssv1542820 | Remapped | Perfect | NC_000006.12:g.(32 556447_32556904)_( 32568117_32571620) dup | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,556,447 | 32,556,904 | 32,568,117 | 32,571,620 |
| nssv1545865 | Remapped | Perfect | NC_000006.12:g.(32 556447_32556904)_( 32568117_32571620) del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,556,447 | 32,556,904 | 32,568,117 | 32,571,620 |
| nssv1547293 | Remapped | Perfect | NC_000006.12:g.(32 556447_32556904)_( 32568117_32571620) del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,556,447 | 32,556,904 | 32,568,117 | 32,571,620 |
| nssv1554129 | Remapped | Perfect | NC_000006.12:g.(32 556447_32556904)_( 32568117_32571620) del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,556,447 | 32,556,904 | 32,568,117 | 32,571,620 |
| nssv1563218 | Remapped | Perfect | NC_000006.12:g.(32 556447_32556904)_( 32568117_32571620) dup | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,556,447 | 32,556,904 | 32,568,117 | 32,571,620 |
| nssv1564676 | Remapped | Perfect | NC_000006.12:g.(32 556447_32556904)_( 32568117_32571620) del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,556,447 | 32,556,904 | 32,568,117 | 32,571,620 |
| nssv1568286 | Remapped | Perfect | NC_000006.12:g.(32 556447_32556904)_( 32568117_32571620) del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,556,447 | 32,556,904 | 32,568,117 | 32,571,620 |
| nssv1587341 | Remapped | Perfect | NC_000006.12:g.(32 556447_32556904)_( 32568117_32571620) del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,556,447 | 32,556,904 | 32,568,117 | 32,571,620 |
| nssv1591170 | Remapped | Perfect | NC_000006.12:g.(32 556447_32556904)_( 32568117_32571620) del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,556,447 | 32,556,904 | 32,568,117 | 32,571,620 |
| nssv1598683 | Remapped | Perfect | NC_000006.12:g.(32 556447_32556904)_( 32568117_32571620) del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,556,447 | 32,556,904 | 32,568,117 | 32,571,620 |
| nssv1600623 | Remapped | Perfect | NC_000006.12:g.(32 556447_32556904)_( 32568117_32571620) del | GRCh38.p12 | First Pass | NC_000006.12 | Chr6 | 32,556,447 | 32,556,904 | 32,568,117 | 32,571,620 |
| nssv1519838 | Remapped | Perfect | NC_000006.11:g.(32 524224_32524681)_( 32535894_32539397) dup | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,524,224 | 32,524,681 | 32,535,894 | 32,539,397 |
| nssv1519881 | Remapped | Perfect | NC_000006.11:g.(32 524224_32524681)_( 32535894_32539397) dup | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,524,224 | 32,524,681 | 32,535,894 | 32,539,397 |
| nssv1521002 | Remapped | Perfect | NC_000006.11:g.(32 524224_32524681)_( 32535894_32539397) dup | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,524,224 | 32,524,681 | 32,535,894 | 32,539,397 |
| nssv1521222 | Remapped | Perfect | NC_000006.11:g.(32 524224_32524681)_( 32535894_32539397) dup | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,524,224 | 32,524,681 | 32,535,894 | 32,539,397 |
| nssv1521255 | Remapped | Perfect | NC_000006.11:g.(32 524224_32524681)_( 32535894_32539397) dup | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,524,224 | 32,524,681 | 32,535,894 | 32,539,397 |
| nssv1521463 | Remapped | Perfect | NC_000006.11:g.(32 524224_32524681)_( 32535894_32539397) dup | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,524,224 | 32,524,681 | 32,535,894 | 32,539,397 |
| nssv1521612 | Remapped | Perfect | NC_000006.11:g.(32 524224_32524681)_( 32535894_32539397) dup | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,524,224 | 32,524,681 | 32,535,894 | 32,539,397 |
| nssv1521795 | Remapped | Perfect | NC_000006.11:g.(32 524224_32524681)_( 32535894_32539397) dup | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,524,224 | 32,524,681 | 32,535,894 | 32,539,397 |
| nssv1522998 | Remapped | Perfect | NC_000006.11:g.(32 524224_32524681)_( 32535894_32539397) dup | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,524,224 | 32,524,681 | 32,535,894 | 32,539,397 |
| nssv1527472 | Remapped | Perfect | NC_000006.11:g.(32 524224_32524681)_( 32535894_32539397) dup | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,524,224 | 32,524,681 | 32,535,894 | 32,539,397 |
| nssv1532176 | Remapped | Perfect | NC_000006.11:g.(32 524224_32524681)_( 32535894_32539397) dup | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,524,224 | 32,524,681 | 32,535,894 | 32,539,397 |
| nssv1537533 | Remapped | Perfect | NC_000006.11:g.(32 524224_32524681)_( 32535894_32539397) dup | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,524,224 | 32,524,681 | 32,535,894 | 32,539,397 |
| nssv1539094 | Remapped | Perfect | NC_000006.11:g.(32 524224_32524681)_( 32535894_32539397) del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,524,224 | 32,524,681 | 32,535,894 | 32,539,397 |
| nssv1542820 | Remapped | Perfect | NC_000006.11:g.(32 524224_32524681)_( 32535894_32539397) dup | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,524,224 | 32,524,681 | 32,535,894 | 32,539,397 |
| nssv1545865 | Remapped | Perfect | NC_000006.11:g.(32 524224_32524681)_( 32535894_32539397) del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,524,224 | 32,524,681 | 32,535,894 | 32,539,397 |
| nssv1547293 | Remapped | Perfect | NC_000006.11:g.(32 524224_32524681)_( 32535894_32539397) del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,524,224 | 32,524,681 | 32,535,894 | 32,539,397 |
| nssv1554129 | Remapped | Perfect | NC_000006.11:g.(32 524224_32524681)_( 32535894_32539397) del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,524,224 | 32,524,681 | 32,535,894 | 32,539,397 |
| nssv1563218 | Remapped | Perfect | NC_000006.11:g.(32 524224_32524681)_( 32535894_32539397) dup | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,524,224 | 32,524,681 | 32,535,894 | 32,539,397 |
| nssv1564676 | Remapped | Perfect | NC_000006.11:g.(32 524224_32524681)_( 32535894_32539397) del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,524,224 | 32,524,681 | 32,535,894 | 32,539,397 |
| nssv1568286 | Remapped | Perfect | NC_000006.11:g.(32 524224_32524681)_( 32535894_32539397) del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,524,224 | 32,524,681 | 32,535,894 | 32,539,397 |
| nssv1587341 | Remapped | Perfect | NC_000006.11:g.(32 524224_32524681)_( 32535894_32539397) del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,524,224 | 32,524,681 | 32,535,894 | 32,539,397 |
| nssv1591170 | Remapped | Perfect | NC_000006.11:g.(32 524224_32524681)_( 32535894_32539397) del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,524,224 | 32,524,681 | 32,535,894 | 32,539,397 |
| nssv1598683 | Remapped | Perfect | NC_000006.11:g.(32 524224_32524681)_( 32535894_32539397) del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,524,224 | 32,524,681 | 32,535,894 | 32,539,397 |
| nssv1600623 | Remapped | Perfect | NC_000006.11:g.(32 524224_32524681)_( 32535894_32539397) del | GRCh37.p13 | First Pass | NC_000006.11 | Chr6 | 32,524,224 | 32,524,681 | 32,535,894 | 32,539,397 |
| nssv1519838 | Submitted genomic | NC_000006.10:g.(32 632202_32632659)_( 32643872_32647375) dup | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,632,202 | 32,632,659 | 32,643,872 | 32,647,375 | ||
| nssv1519881 | Submitted genomic | NC_000006.10:g.(32 632202_32632659)_( 32643872_32647375) dup | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,632,202 | 32,632,659 | 32,643,872 | 32,647,375 | ||
| nssv1521002 | Submitted genomic | NC_000006.10:g.(32 632202_32632659)_( 32643872_32647375) dup | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,632,202 | 32,632,659 | 32,643,872 | 32,647,375 | ||
| nssv1521222 | Submitted genomic | NC_000006.10:g.(32 632202_32632659)_( 32643872_32647375) dup | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,632,202 | 32,632,659 | 32,643,872 | 32,647,375 | ||
| nssv1521255 | Submitted genomic | NC_000006.10:g.(32 632202_32632659)_( 32643872_32647375) dup | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,632,202 | 32,632,659 | 32,643,872 | 32,647,375 | ||
| nssv1521463 | Submitted genomic | NC_000006.10:g.(32 632202_32632659)_( 32643872_32647375) dup | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,632,202 | 32,632,659 | 32,643,872 | 32,647,375 | ||
| nssv1521612 | Submitted genomic | NC_000006.10:g.(32 632202_32632659)_( 32643872_32647375) dup | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,632,202 | 32,632,659 | 32,643,872 | 32,647,375 | ||
| nssv1521795 | Submitted genomic | NC_000006.10:g.(32 632202_32632659)_( 32643872_32647375) dup | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,632,202 | 32,632,659 | 32,643,872 | 32,647,375 | ||
| nssv1522998 | Submitted genomic | NC_000006.10:g.(32 632202_32632659)_( 32643872_32647375) dup | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,632,202 | 32,632,659 | 32,643,872 | 32,647,375 | ||
| nssv1527472 | Submitted genomic | NC_000006.10:g.(32 632202_32632659)_( 32643872_32647375) dup | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,632,202 | 32,632,659 | 32,643,872 | 32,647,375 | ||
| nssv1532176 | Submitted genomic | NC_000006.10:g.(32 632202_32632659)_( 32643872_32647375) dup | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,632,202 | 32,632,659 | 32,643,872 | 32,647,375 | ||
| nssv1537533 | Submitted genomic | NC_000006.10:g.(32 632202_32632659)_( 32643872_32647375) dup | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,632,202 | 32,632,659 | 32,643,872 | 32,647,375 | ||
| nssv1539094 | Submitted genomic | NC_000006.10:g.(32 632202_32632659)_( 32643872_32647375) del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,632,202 | 32,632,659 | 32,643,872 | 32,647,375 | ||
| nssv1542820 | Submitted genomic | NC_000006.10:g.(32 632202_32632659)_( 32643872_32647375) dup | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,632,202 | 32,632,659 | 32,643,872 | 32,647,375 | ||
| nssv1545865 | Submitted genomic | NC_000006.10:g.(32 632202_32632659)_( 32643872_32647375) del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,632,202 | 32,632,659 | 32,643,872 | 32,647,375 | ||
| nssv1547293 | Submitted genomic | NC_000006.10:g.(32 632202_32632659)_( 32643872_32647375) del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,632,202 | 32,632,659 | 32,643,872 | 32,647,375 | ||
| nssv1554129 | Submitted genomic | NC_000006.10:g.(32 632202_32632659)_( 32643872_32647375) del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,632,202 | 32,632,659 | 32,643,872 | 32,647,375 | ||
| nssv1563218 | Submitted genomic | NC_000006.10:g.(32 632202_32632659)_( 32643872_32647375) dup | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,632,202 | 32,632,659 | 32,643,872 | 32,647,375 | ||
| nssv1564676 | Submitted genomic | NC_000006.10:g.(32 632202_32632659)_( 32643872_32647375) del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,632,202 | 32,632,659 | 32,643,872 | 32,647,375 | ||
| nssv1568286 | Submitted genomic | NC_000006.10:g.(32 632202_32632659)_( 32643872_32647375) del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,632,202 | 32,632,659 | 32,643,872 | 32,647,375 | ||
| nssv1587341 | Submitted genomic | NC_000006.10:g.(32 632202_32632659)_( 32643872_32647375) del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,632,202 | 32,632,659 | 32,643,872 | 32,647,375 | ||
| nssv1591170 | Submitted genomic | NC_000006.10:g.(32 632202_32632659)_( 32643872_32647375) del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,632,202 | 32,632,659 | 32,643,872 | 32,647,375 | ||
| nssv1598683 | Submitted genomic | NC_000006.10:g.(32 632202_32632659)_( 32643872_32647375) del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,632,202 | 32,632,659 | 32,643,872 | 32,647,375 | ||
| nssv1600623 | Submitted genomic | NC_000006.10:g.(32 632202_32632659)_( 32643872_32647375) del | NCBI36 (hg18) | NC_000006.10 | Chr6 | 32,632,202 | 32,632,659 | 32,643,872 | 32,647,375 |