nsv890902
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:618,979
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2030 SVs from 89 studies. See in: genome view
Overlapping variant regions from other studies: 2030 SVs from 89 studies. See in: genome view
Overlapping variant regions from other studies: 559 SVs from 23 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv890902 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000008.11 | Chr8 | 52,418,022 | 52,421,616 | 53,034,737 | 53,037,000 |
| nsv890902 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000008.10 | Chr8 | 53,330,582 | 53,334,176 | 53,947,297 | 53,949,560 |
| nsv890902 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000008.9 | Chr8 | 53,493,135 | 53,496,729 | 54,109,850 | 54,112,113 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1520836 | copy number gain | SP51264 | SNP array | SNP genotyping analysis | nssv1520833, nssv1520834, nssv1520835 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1520836 | Remapped | Perfect | NC_000008.11:g.(52 418022_52421616)_( 53034737_53037000) dup | GRCh38.p12 | First Pass | NC_000008.11 | Chr8 | 52,418,022 | 52,421,616 | 53,034,737 | 53,037,000 |
| nssv1520836 | Remapped | Perfect | NC_000008.10:g.(53 330582_53334176)_( 53947297_53949560) dup | GRCh37.p13 | First Pass | NC_000008.10 | Chr8 | 53,330,582 | 53,334,176 | 53,947,297 | 53,949,560 |
| nssv1520836 | Submitted genomic | NC_000008.9:g.(534 93135_53496729)_(5 4109850_54112113)d up | NCBI36 (hg18) | NC_000008.9 | Chr8 | 53,493,135 | 53,496,729 | 54,109,850 | 54,112,113 |