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dbVar

Database of genomic structural variation

nsv898197

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:100,333

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 377 SVs from 62 studies. See in: genome view

Remapped(Score: Perfect):96,770,718-96,871,050

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv898197	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000011.10	Chr11	96,770,718	96,782,321	96,855,926	96,871,050
nsv898197	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000011.9	Chr11	96,641,718	96,653,321	96,726,926	96,742,050
nsv898197	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000011.8	Chr11	96,146,928	96,158,531	96,232,136	96,247,260

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1522991	copy number loss	SP53550	SNP array	SNP genotyping analysis	20
nssv1527884	copy number loss	SP81061	SNP array	SNP genotyping analysis	13

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1522991	Remapped	Perfect	NC_000011.10:g.(96 770718_96782321)_( 96855926_96871050) del	GRCh38.p12	First Pass	NC_000011.10	Chr11	96,770,718	96,782,321	96,855,926	96,871,050
nssv1527884	Remapped	Perfect	NC_000011.10:g.(96 770718_96782321)_( 96855926_96871050) del	GRCh38.p12	First Pass	NC_000011.10	Chr11	96,770,718	96,782,321	96,855,926	96,871,050
nssv1522991	Remapped	Perfect	NC_000011.9:g.(966 41718_96653321)_(9 6726926_96742050)d el	GRCh37.p13	First Pass	NC_000011.9	Chr11	96,641,718	96,653,321	96,726,926	96,742,050
nssv1527884	Remapped	Perfect	NC_000011.9:g.(966 41718_96653321)_(9 6726926_96742050)d el	GRCh37.p13	First Pass	NC_000011.9	Chr11	96,641,718	96,653,321	96,726,926	96,742,050
nssv1522991	Submitted genomic		NC_000011.8:g.(961 46928_96158531)_(9 6232136_96247260)d el	NCBI36 (hg18)		NC_000011.8	Chr11	96,146,928	96,158,531	96,232,136	96,247,260
nssv1527884	Submitted genomic		NC_000011.8:g.(961 46928_96158531)_(9 6232136_96247260)d el	NCBI36 (hg18)		NC_000011.8	Chr11	96,146,928	96,158,531	96,232,136	96,247,260

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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