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dbVar

Database of genomic structural variation

nsv900114

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:131,141

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 560 SVs from 57 studies. See in: genome view

Remapped(Score: Perfect):55,869,089-56,000,229

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv900114	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000013.11	Chr13	55,869,089	55,896,707	55,994,164	56,000,229
nsv900114	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000013.10	Chr13	56,443,223	56,470,841	56,568,298	56,574,363
nsv900114	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000013.9	Chr13	55,341,224	55,368,842	55,466,299	55,472,364

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1569476	copy number loss	IS31581	SNP array	SNP genotyping analysis	63
nssv1600640	copy number gain	IS41906	SNP array	SNP genotyping analysis	21

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1569476	Remapped	Perfect	NC_000013.11:g.(55 869089_55896707)_( 55994164_56000229) del	GRCh38.p12	First Pass	NC_000013.11	Chr13	55,869,089	55,896,707	55,994,164	56,000,229
nssv1600640	Remapped	Perfect	NC_000013.11:g.(55 869089_55896707)_( 55994164_56000229) dup	GRCh38.p12	First Pass	NC_000013.11	Chr13	55,869,089	55,896,707	55,994,164	56,000,229
nssv1569476	Remapped	Perfect	NC_000013.10:g.(56 443223_56470841)_( 56568298_56574363) del	GRCh37.p13	First Pass	NC_000013.10	Chr13	56,443,223	56,470,841	56,568,298	56,574,363
nssv1600640	Remapped	Perfect	NC_000013.10:g.(56 443223_56470841)_( 56568298_56574363) dup	GRCh37.p13	First Pass	NC_000013.10	Chr13	56,443,223	56,470,841	56,568,298	56,574,363
nssv1569476	Submitted genomic		NC_000013.9:g.(553 41224_55368842)_(5 5466299_55472364)d el	NCBI36 (hg18)		NC_000013.9	Chr13	55,341,224	55,368,842	55,466,299	55,472,364
nssv1600640	Submitted genomic		NC_000013.9:g.(553 41224_55368842)_(5 5466299_55472364)d up	NCBI36 (hg18)		NC_000013.9	Chr13	55,341,224	55,368,842	55,466,299	55,472,364

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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