nsv902514
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:7
- Validation:Not tested
- Clinical Assertions: No
- Region Size:123,921
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 2783 SVs from 96 studies. See in: genome view
Overlapping variant regions from other studies: 1738 SVs from 76 studies. See in: genome view
Overlapping variant regions from other studies: 2759 SVs from 94 studies. See in: genome view
Overlapping variant regions from other studies: 820 SVs from 49 studies. See in: genome view
Overlapping variant regions from other studies: 739 SVs from 31 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv902514 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | Second Pass | NC_000014.9 | Chr14 | 105,546,146 | 105,546,146 | 105,669,295 | 105,669,295 |
| nsv902514 | Remapped | Good | GRCh38.p12 | ALT_REF_LOCI_1 | First Pass | NT_187600.1 | Chr14|NT_1 87600.1 | 13,144 | 13,144 | 137,064 | 137,064 |
| nsv902514 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | Second Pass | NC_000014.8 | Chr14 | 106,012,483 | 106,028,569 | 106,112,716 | 106,135,632 |
| nsv902514 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_004166863.1 | Chr14|NW_0 04166863.1 | 209,313 | 225,399 | 309,546 | 332,462 |
| nsv902514 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000014.7 | Chr14 | 105,083,528 | 105,099,614 | 105,183,761 | 105,206,677 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1523004 | copy number gain | SP53550 | SNP array | SNP genotyping analysis | 20 |
| nssv1542613 | copy number gain | MS15805 | SNP array | SNP genotyping analysis | 8 |
| nssv1575313 | copy number gain | IS33702 | SNP array | SNP genotyping analysis | 13 |
| nssv1579656 | copy number gain | IS35145 | SNP array | SNP genotyping analysis | 56 |
| nssv1584931 | copy number gain | IS37194 | SNP array | SNP genotyping analysis | 21 |
| nssv1596352 | copy number gain | IS40494 | SNP array | SNP genotyping analysis | 15 |
| nssv1599780 | copy number gain | IS41786 | SNP array | SNP genotyping analysis | 18 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1523004 | Remapped | Good | NT_187600.1:g.(131 44_13144)_(137064_ 137064)dup | GRCh38.p12 | First Pass | NT_187600.1 | Chr14|NT_1 87600.1 | 13,144 | 13,144 | 137,064 | 137,064 |
| nssv1542613 | Remapped | Good | NT_187600.1:g.(131 44_13144)_(137064_ 137064)dup | GRCh38.p12 | First Pass | NT_187600.1 | Chr14|NT_1 87600.1 | 13,144 | 13,144 | 137,064 | 137,064 |
| nssv1575313 | Remapped | Good | NT_187600.1:g.(131 44_13144)_(137064_ 137064)dup | GRCh38.p12 | First Pass | NT_187600.1 | Chr14|NT_1 87600.1 | 13,144 | 13,144 | 137,064 | 137,064 |
| nssv1579656 | Remapped | Good | NT_187600.1:g.(131 44_13144)_(137064_ 137064)dup | GRCh38.p12 | First Pass | NT_187600.1 | Chr14|NT_1 87600.1 | 13,144 | 13,144 | 137,064 | 137,064 |
| nssv1584931 | Remapped | Good | NT_187600.1:g.(131 44_13144)_(137064_ 137064)dup | GRCh38.p12 | First Pass | NT_187600.1 | Chr14|NT_1 87600.1 | 13,144 | 13,144 | 137,064 | 137,064 |
| nssv1596352 | Remapped | Good | NT_187600.1:g.(131 44_13144)_(137064_ 137064)dup | GRCh38.p12 | First Pass | NT_187600.1 | Chr14|NT_1 87600.1 | 13,144 | 13,144 | 137,064 | 137,064 |
| nssv1599780 | Remapped | Good | NT_187600.1:g.(131 44_13144)_(137064_ 137064)dup | GRCh38.p12 | First Pass | NT_187600.1 | Chr14|NT_1 87600.1 | 13,144 | 13,144 | 137,064 | 137,064 |
| nssv1523004 | Remapped | Perfect | NC_000014.9:g.(105 546146_105546146)_ (105669295_1056692 95)dup | GRCh38.p12 | Second Pass | NC_000014.9 | Chr14 | 105,546,146 | 105,546,146 | 105,669,295 | 105,669,295 |
| nssv1542613 | Remapped | Perfect | NC_000014.9:g.(105 546146_105546146)_ (105669295_1056692 95)dup | GRCh38.p12 | Second Pass | NC_000014.9 | Chr14 | 105,546,146 | 105,546,146 | 105,669,295 | 105,669,295 |
| nssv1575313 | Remapped | Perfect | NC_000014.9:g.(105 546146_105546146)_ (105669295_1056692 95)dup | GRCh38.p12 | Second Pass | NC_000014.9 | Chr14 | 105,546,146 | 105,546,146 | 105,669,295 | 105,669,295 |
| nssv1579656 | Remapped | Perfect | NC_000014.9:g.(105 546146_105546146)_ (105669295_1056692 95)dup | GRCh38.p12 | Second Pass | NC_000014.9 | Chr14 | 105,546,146 | 105,546,146 | 105,669,295 | 105,669,295 |
| nssv1584931 | Remapped | Perfect | NC_000014.9:g.(105 546146_105546146)_ (105669295_1056692 95)dup | GRCh38.p12 | Second Pass | NC_000014.9 | Chr14 | 105,546,146 | 105,546,146 | 105,669,295 | 105,669,295 |
| nssv1596352 | Remapped | Perfect | NC_000014.9:g.(105 546146_105546146)_ (105669295_1056692 95)dup | GRCh38.p12 | Second Pass | NC_000014.9 | Chr14 | 105,546,146 | 105,546,146 | 105,669,295 | 105,669,295 |
| nssv1599780 | Remapped | Perfect | NC_000014.9:g.(105 546146_105546146)_ (105669295_1056692 95)dup | GRCh38.p12 | Second Pass | NC_000014.9 | Chr14 | 105,546,146 | 105,546,146 | 105,669,295 | 105,669,295 |
| nssv1523004 | Remapped | Perfect | NW_004166863.1:g.( 209313_225399)_(30 9546_332462)dup | GRCh37.p13 | First Pass | NW_004166863.1 | Chr14|NW_0 04166863.1 | 209,313 | 225,399 | 309,546 | 332,462 |
| nssv1542613 | Remapped | Perfect | NW_004166863.1:g.( 209313_225399)_(30 9546_332462)dup | GRCh37.p13 | First Pass | NW_004166863.1 | Chr14|NW_0 04166863.1 | 209,313 | 225,399 | 309,546 | 332,462 |
| nssv1575313 | Remapped | Perfect | NW_004166863.1:g.( 209313_225399)_(30 9546_332462)dup | GRCh37.p13 | First Pass | NW_004166863.1 | Chr14|NW_0 04166863.1 | 209,313 | 225,399 | 309,546 | 332,462 |
| nssv1579656 | Remapped | Perfect | NW_004166863.1:g.( 209313_225399)_(30 9546_332462)dup | GRCh37.p13 | First Pass | NW_004166863.1 | Chr14|NW_0 04166863.1 | 209,313 | 225,399 | 309,546 | 332,462 |
| nssv1584931 | Remapped | Perfect | NW_004166863.1:g.( 209313_225399)_(30 9546_332462)dup | GRCh37.p13 | First Pass | NW_004166863.1 | Chr14|NW_0 04166863.1 | 209,313 | 225,399 | 309,546 | 332,462 |
| nssv1596352 | Remapped | Perfect | NW_004166863.1:g.( 209313_225399)_(30 9546_332462)dup | GRCh37.p13 | First Pass | NW_004166863.1 | Chr14|NW_0 04166863.1 | 209,313 | 225,399 | 309,546 | 332,462 |
| nssv1599780 | Remapped | Perfect | NW_004166863.1:g.( 209313_225399)_(30 9546_332462)dup | GRCh37.p13 | First Pass | NW_004166863.1 | Chr14|NW_0 04166863.1 | 209,313 | 225,399 | 309,546 | 332,462 |
| nssv1523004 | Remapped | Perfect | NC_000014.8:g.(106 012483_106028569)_ (106112716_1061356 32)dup | GRCh37.p13 | Second Pass | NC_000014.8 | Chr14 | 106,012,483 | 106,028,569 | 106,112,716 | 106,135,632 |
| nssv1542613 | Remapped | Perfect | NC_000014.8:g.(106 012483_106028569)_ (106112716_1061356 32)dup | GRCh37.p13 | Second Pass | NC_000014.8 | Chr14 | 106,012,483 | 106,028,569 | 106,112,716 | 106,135,632 |
| nssv1575313 | Remapped | Perfect | NC_000014.8:g.(106 012483_106028569)_ (106112716_1061356 32)dup | GRCh37.p13 | Second Pass | NC_000014.8 | Chr14 | 106,012,483 | 106,028,569 | 106,112,716 | 106,135,632 |
| nssv1579656 | Remapped | Perfect | NC_000014.8:g.(106 012483_106028569)_ (106112716_1061356 32)dup | GRCh37.p13 | Second Pass | NC_000014.8 | Chr14 | 106,012,483 | 106,028,569 | 106,112,716 | 106,135,632 |
| nssv1584931 | Remapped | Perfect | NC_000014.8:g.(106 012483_106028569)_ (106112716_1061356 32)dup | GRCh37.p13 | Second Pass | NC_000014.8 | Chr14 | 106,012,483 | 106,028,569 | 106,112,716 | 106,135,632 |
| nssv1596352 | Remapped | Perfect | NC_000014.8:g.(106 012483_106028569)_ (106112716_1061356 32)dup | GRCh37.p13 | Second Pass | NC_000014.8 | Chr14 | 106,012,483 | 106,028,569 | 106,112,716 | 106,135,632 |
| nssv1599780 | Remapped | Perfect | NC_000014.8:g.(106 012483_106028569)_ (106112716_1061356 32)dup | GRCh37.p13 | Second Pass | NC_000014.8 | Chr14 | 106,012,483 | 106,028,569 | 106,112,716 | 106,135,632 |
| nssv1523004 | Submitted genomic | NC_000014.7:g.(105 083528_105099614)_ (105183761_1052066 77)dup | NCBI36 (hg18) | NC_000014.7 | Chr14 | 105,083,528 | 105,099,614 | 105,183,761 | 105,206,677 | ||
| nssv1542613 | Submitted genomic | NC_000014.7:g.(105 083528_105099614)_ (105183761_1052066 77)dup | NCBI36 (hg18) | NC_000014.7 | Chr14 | 105,083,528 | 105,099,614 | 105,183,761 | 105,206,677 | ||
| nssv1575313 | Submitted genomic | NC_000014.7:g.(105 083528_105099614)_ (105183761_1052066 77)dup | NCBI36 (hg18) | NC_000014.7 | Chr14 | 105,083,528 | 105,099,614 | 105,183,761 | 105,206,677 | ||
| nssv1579656 | Submitted genomic | NC_000014.7:g.(105 083528_105099614)_ (105183761_1052066 77)dup | NCBI36 (hg18) | NC_000014.7 | Chr14 | 105,083,528 | 105,099,614 | 105,183,761 | 105,206,677 | ||
| nssv1584931 | Submitted genomic | NC_000014.7:g.(105 083528_105099614)_ (105183761_1052066 77)dup | NCBI36 (hg18) | NC_000014.7 | Chr14 | 105,083,528 | 105,099,614 | 105,183,761 | 105,206,677 | ||
| nssv1596352 | Submitted genomic | NC_000014.7:g.(105 083528_105099614)_ (105183761_1052066 77)dup | NCBI36 (hg18) | NC_000014.7 | Chr14 | 105,083,528 | 105,099,614 | 105,183,761 | 105,206,677 | ||
| nssv1599780 | Submitted genomic | NC_000014.7:g.(105 083528_105099614)_ (105183761_1052066 77)dup | NCBI36 (hg18) | NC_000014.7 | Chr14 | 105,083,528 | 105,099,614 | 105,183,761 | 105,206,677 |