nsv903149
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:121,187
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 4270 SVs from 94 studies. See in: genome view
Overlapping variant regions from other studies: 4163 SVs from 95 studies. See in: genome view
Overlapping variant regions from other studies: 2801 SVs from 33 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv903149 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000015.10 | Chr15 | 20,932,790 | 20,936,471 | 21,049,934 | 21,053,976 |
| nsv903149 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000015.9 | Chr15 | 21,138,119 | 21,141,800 | 21,255,263 | 21,259,305 |
| nsv903149 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000015.8 | Chr15 | 19,402,778 | 19,406,459 | 19,519,922 | 19,523,964 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1573408 | copy number gain | IS33351 | SNP array | SNP genotyping analysis | 10 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1573408 | Remapped | Perfect | NC_000015.10:g.(20 932790_20936471)_( 21049934_21053976) dup | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 20,932,790 | 20,936,471 | 21,049,934 | 21,053,976 |
| nssv1573408 | Remapped | Perfect | NC_000015.9:g.(211 38119_21141800)_(2 1255263_21259305)d up | GRCh37.p13 | First Pass | NC_000015.9 | Chr15 | 21,138,119 | 21,141,800 | 21,255,263 | 21,259,305 |
| nssv1573408 | Submitted genomic | NC_000015.8:g.(194 02778_19406459)_(1 9519922_19523964)d up | NCBI36 (hg18) | NC_000015.8 | Chr15 | 19,402,778 | 19,406,459 | 19,519,922 | 19,523,964 |