nsv905960
- Organism: Homo sapiens
- Study:nstd71 (Xu et al. 2011)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:36,396
- Publication(s):Xu et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1938 SVs from 84 studies. See in: genome view
Overlapping variant regions from other studies: 1940 SVs from 85 studies. See in: genome view
Overlapping variant regions from other studies: 1327 SVs from 29 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv905960 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000016.10 | Chr16 | 32,490,515 | 32,491,547 | 32,525,127 | 32,526,910 |
| nsv905960 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000016.9 | Chr16 | 32,501,836 | 32,502,868 | 32,536,448 | 32,538,231 |
| nsv905960 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000016.8 | Chr16 | 32,409,337 | 32,410,369 | 32,443,949 | 32,445,732 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv1539954 | copy number gain | MS14630 | SNP array | SNP genotyping analysis | 12 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv1539954 | Remapped | Perfect | NC_000016.10:g.(32 490515_32491547)_( 32525127_32526910) dup | GRCh38.p12 | First Pass | NC_000016.10 | Chr16 | 32,490,515 | 32,491,547 | 32,525,127 | 32,526,910 |
| nssv1539954 | Remapped | Perfect | NC_000016.9:g.(325 01836_32502868)_(3 2536448_32538231)d up | GRCh37.p13 | First Pass | NC_000016.9 | Chr16 | 32,501,836 | 32,502,868 | 32,536,448 | 32,538,231 |
| nssv1539954 | Submitted genomic | NC_000016.8:g.(324 09337_32410369)_(3 2443949_32445732)d up | NCBI36 (hg18) | NC_000016.8 | Chr16 | 32,409,337 | 32,410,369 | 32,443,949 | 32,445,732 |