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dbVar

Database of genomic structural variation

nsv912739

Organism: Homo sapiens

Study:nstd71 (Xu et al. 2011)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI36 (hg18)

Variant Calls:4
Validation:Not tested
Clinical Assertions: No
Region Size:52,753

Publication(s):Xu et al. 2011

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1694 SVs from 83 studies. See in: genome view

Remapped(Score: Perfect):14,797,055-14,849,807

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nsv912739	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000020.11	Chr20	14,797,055	14,799,673	14,845,141	14,849,807
nsv912739	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000020.10	Chr20	14,777,701	14,780,319	14,825,787	14,830,453
nsv912739	Submitted genomic		NCBI36 (hg18)	Primary Assembly		NC_000020.9	Chr20	14,725,701	14,728,319	14,773,787	14,778,453

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Other Calls in this Sample and Study
nssv1512786	copy number loss	SP55624	SNP array	SNP genotyping analysis	11
nssv1523805	copy number loss	SP54217	SNP array	SNP genotyping analysis	10
nssv1525058	copy number loss	SP55473	SNP array	SNP genotyping analysis	14
nssv1528887	copy number loss	SP81387	SNP array	SNP genotyping analysis	11

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Outer Start	Inner Start	Inner Stop	Outer Stop
nssv1512786	Remapped	Perfect	NC_000020.11:g.(14 797055_14799673)_( 14845141_14849807) del	GRCh38.p12	First Pass	NC_000020.11	Chr20	14,797,055	14,799,673	14,845,141	14,849,807
nssv1523805	Remapped	Perfect	NC_000020.11:g.(14 797055_14799673)_( 14845141_14849807) del	GRCh38.p12	First Pass	NC_000020.11	Chr20	14,797,055	14,799,673	14,845,141	14,849,807
nssv1525058	Remapped	Perfect	NC_000020.11:g.(14 797055_14799673)_( 14845141_14849807) del	GRCh38.p12	First Pass	NC_000020.11	Chr20	14,797,055	14,799,673	14,845,141	14,849,807
nssv1528887	Remapped	Perfect	NC_000020.11:g.(14 797055_14799673)_( 14845141_14849807) del	GRCh38.p12	First Pass	NC_000020.11	Chr20	14,797,055	14,799,673	14,845,141	14,849,807
nssv1512786	Remapped	Perfect	NC_000020.10:g.(14 777701_14780319)_( 14825787_14830453) del	GRCh37.p13	First Pass	NC_000020.10	Chr20	14,777,701	14,780,319	14,825,787	14,830,453
nssv1523805	Remapped	Perfect	NC_000020.10:g.(14 777701_14780319)_( 14825787_14830453) del	GRCh37.p13	First Pass	NC_000020.10	Chr20	14,777,701	14,780,319	14,825,787	14,830,453
nssv1525058	Remapped	Perfect	NC_000020.10:g.(14 777701_14780319)_( 14825787_14830453) del	GRCh37.p13	First Pass	NC_000020.10	Chr20	14,777,701	14,780,319	14,825,787	14,830,453
nssv1528887	Remapped	Perfect	NC_000020.10:g.(14 777701_14780319)_( 14825787_14830453) del	GRCh37.p13	First Pass	NC_000020.10	Chr20	14,777,701	14,780,319	14,825,787	14,830,453
nssv1512786	Submitted genomic		NC_000020.9:g.(147 25701_14728319)_(1 4773787_14778453)d el	NCBI36 (hg18)		NC_000020.9	Chr20	14,725,701	14,728,319	14,773,787	14,778,453
nssv1523805	Submitted genomic		NC_000020.9:g.(147 25701_14728319)_(1 4773787_14778453)d el	NCBI36 (hg18)		NC_000020.9	Chr20	14,725,701	14,728,319	14,773,787	14,778,453
nssv1525058	Submitted genomic		NC_000020.9:g.(147 25701_14728319)_(1 4773787_14778453)d el	NCBI36 (hg18)		NC_000020.9	Chr20	14,725,701	14,728,319	14,773,787	14,778,453
nssv1528887	Submitted genomic		NC_000020.9:g.(147 25701_14728319)_(1 4773787_14778453)d el	NCBI36 (hg18)		NC_000020.9	Chr20	14,725,701	14,728,319	14,773,787	14,778,453

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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