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Items: 8

1.

Conservation of transcription start sites within genes across a bacterial genus

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Shewanella sp. W3-18-1; Shewanella sp. MR-4; Shewanella sp. MR-7; Shewanella sp. ANA-3; Shewanella oneidensis MR-1; Shewanella loihica PV-4; Shewanella amazonensis SB2B; Shewanella putrefaciens CN-32
Type:
Expression profiling by genome tiling array; Expression profiling by high throughput sequencing
10 related Platforms
26 Samples
Download data: FTR, WIG
Series
Accession:
GSE58337
ID:
200058337

PubMed Full text in PMC Similar studies Analyze with GEO2R

2.

Transcript map of Shewanella oneidensis MR-1

(Submitter supplied) High-resolution tiling analysis of the MR-1 transcriptome under diverse growth conditions The conditions include aerobic growth in Luria-Bertani broth (LB), aerobic growth in defined lactate minimal medium, anaerobic growth in defined lactate minimal medium with 20mM dimethyl sulfoxide as the electron acceptor, anaerobic growth in defined lactate minimal medium with 10mM iron (III) citrate as the electron acceptor, 10 minutes post heat shock at 42oC see GSE39468 for tiling data on lactate minimal media
Organism:
Shewanella oneidensis MR-1
Type:
Expression profiling by genome tiling array
Platform:
GPL16797
5 Samples
Download data: FTR
Series
Accession:
GSE45217
ID:
200045217

PubMed Full text in PMC Similar studies Analyze with GEO2R

3.

Custom NimbleGen Shewanella oneidensis MR-1 Tiling v2 [NimbleGen_MR1_2005K_1]

(Submitter supplied) NC_004347 and NC_004349 100318_Shew_one_MR1_JK_EXP_HX1.ndf Protocol: see NimbleGen website
Organism:
Shewanella oneidensis MR-1
2 Series
5 Samples
Download data: NDF
Platform
Accession:
GPL16797
ID:
100016797

4.

Genomic

Organism:
Shewanella oneidensis MR-1
Source name:
MR-1 grown in rich LB medium
Platform:
GPL16797
Series:
GSE45217 GSE58337
Download data: FTR
Sample
Accession:
GSM1099270
ID:
301099270

5.

HS

Organism:
Shewanella oneidensis MR-1
Source name:
MR-1 heat shocked for 10 minutes at 42 oC.
Platform:
GPL16797
Series:
GSE45217 GSE58337
Download data: FTR
Sample
Accession:
GSM1099269
ID:
301099269

6.

FE

Organism:
Shewanella oneidensis MR-1
Source name:
MR-1 grown in minimal lactate medium anaerobically with iron (III) citrate as the electron acceptor
Platform:
GPL16797
Series:
GSE45217 GSE58337
Download data: FTR
Sample
Accession:
GSM1099268
ID:
301099268

7.

DMSO

Organism:
Shewanella oneidensis MR-1
Source name:
MR-1 grown in minimal lactate medium anaerobically with dimethyl sulfoxide as the electron acceptor
Platform:
GPL16797
Series:
GSE45217 GSE58337
Download data: FTR
Sample
Accession:
GSM1099267
ID:
301099267

8.

LB

Organism:
Shewanella oneidensis MR-1
Source name:
MR-1 grown in rich LB medium
Platform:
GPL16797
Series:
GSE45217 GSE58337
Download data: FTR
Sample
Accession:
GSM1099266
ID:
301099266

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db=gds|term=GPL16797[Accession]|query=1|qty=9|blobid=MCID_678d2749f521160690cad943|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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