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Platform GPL16797 Query DataSets for GPL16797
Status Public on Mar 18, 2013
Title Custom NimbleGen Shewanella oneidensis MR-1 Tiling v2 [NimbleGen_MR1_2005K_1]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Shewanella oneidensis MR-1
Manufacturer NimbleGen
Manufacture protocol see NimbleGen website
 
Description NC_004347 and NC_004349
100318_Shew_one_MR1_JK_EXP_HX1.ndf
 
Submission date Mar 15, 2013
Last update date Mar 18, 2013
Contact name Wenjun Shao
E-mail(s) [email protected]
Organization name University of California
Department Molecular and Cell Biology
Lab Adam Arkin
Street address 2151 Berkeley Way
City Berkeley
State/province CA
ZIP/Postal code 94704-5230
Country USA
 
Samples (5) GSM1099266, GSM1099267, GSM1099268, GSM1099269, GSM1099270
Series (2)
GSE45217 Transcript map of Shewanella oneidensis MR-1
GSE58337 Conservation of transcription start sites within genes across a bacterial genus

Data table header descriptions
ID
SEQUENCE Sequence of oligo
SCAFFOLD 139 for main chromosome; 140 for megaplasmid
RANGE_START Chromosomal start position of oligo
LENGTH Oligo length
RANGE_END Chromosomal end position of oligo
STRAND
RANGE_GB

Data table
ID SEQUENCE SCAFFOLD RANGE_START LENGTH RANGE_END STRAND RANGE_GB
2 GACAGAGAACTTAGCAAACTCATGATTTTGCGACGTTTTAAAGTCAGCTAGCATGTGGAA MR1_Chromosome 2720927 60 2720986 + NC_004347.1
3 TAGTCGTTGGCATCGCCGCAGAGCTTGAGTTCAAGACCTGGGCTGTTCCAAACGCCAAAG MR1_Chromosome 1378915 60 1378974 + NC_004347.1
4 CACTAAGGTGGTTACACTGGACAGATCTAAATTGAACTGGCCAATAATATCAAATAGTCT MR1_Chromosome 1574106 60 1574047 - NC_004347.1
6 TGCACCACTCTTTAGACACAGTGCCAGATTAACTGAGCACCAACGTCGCTTAAGTCTCTC MR1_Chromosome 1949061 60 1949002 - NC_004347.1
7 AGGCGGATGTTGCTTTGAGTCTGGTGAGCTTTCCAATAACAAAAGGCTTTAGCTTCGAGT MR1_Chromosome 4652814 60 4652755 - NC_004347.1
8 TTCTTGACTCGCTTGAGATATGCCGGTAAGTCCAATGGCAATCGCGATAAATGATTTATT MR1_Chromosome 3451864 60 3451923 + NC_004347.1
9 CTTAAATAGCTCACCATACGCTGACTCTCAGCGGTATAGCATCCCATGCGAAACTCTCCT MR1_Chromosome 934946 60 935005 + NC_004347.1
10 ACTGCTGGCGAGCTCGGCTGCAACGTCACATTCCCAAATGGTAGAAACTGGCGCGCCGCG MR1_Chromosome 2162074 60 2162015 - NC_004347.1
11 ATAAAATTTCAGTTGAGCGCACGGCTTCGTCCACGGCGGCATTGATCAGCTCTTGCTCTT MR1_Chromosome 1228030 60 1227971 - NC_004347.1
12 ATATTAGCGATATTTAAAATCTCTTCTGCCTGCCCATGCATTCCCTTTACTGATGTCGAA MR1_Chromosome 2223301 60 2223242 - NC_004347.1
14 GCTTATATAGGAAACTTGCAAATAATTGAGGTTGTAAAAGATAATCTATACCTAAAACAA MR1_Chromosome 4020594 60 4020535 - NC_004347.1
15 GTGACCCAGCCAAGCAAAACAATGGGGACATTGCACTTGCGCGTGAAAACCTTTTCCGCG MR1_Chromosome 584268 60 584209 - NC_004347.1
16 AGCACGGTGTGAACCAATGGCTTGGTCCATCACGTTCAGGATATGCACACGTGCGCCATA MR1_Chromosome 1256455 60 1256396 - NC_004347.1
17 GCAAGCAATAGTAGTGATTATTGGTGCGTCAGGTGTGGGCAAAAGCAGAGCTTTAGAAGA MR1_Chromosome 2791823 60 2791882 + NC_004347.1
18 CTATCGTTATGCGGCGATTCAGCTGGCGCAAACGACAACGCGCTCTGTGATCGGTACATT MR1_Chromosome 4286707 60 4286648 - NC_004347.1
19 CCGTGACAACACTGCTACCGTCGAATCCATCTCCCTCATTACCGCCTCTATTCTCTCTAA MR1_Chromosome 1265261 60 1265320 + NC_004347.1
20 TTACCTACTGCTTTAGCCGCGTCTACGTTACCGGTACTCTTCAGTTGCTCTTTAACCGCT MR1_Chromosome 253455 60 253396 - NC_004347.1
21 CTGATTTATGACGAGGCCAGCGGTAAATGGAAGAACGCCGCCAAAGCCATGGAGCAAGTC MR1_Chromosome 698607 60 698666 + NC_004347.1
22 AGCCTTGGCAATTCAGCACCTAGGGCTGAATGCGTTAGCTCACATCAAACGGCCAAGGAT MR1_Chromosome 4153519 60 4153578 + NC_004347.1
23 TTTAGAACATCCGATCGAGTACTAACTGATGTTGATGCACGATTGGCCTGTACCGGATAA MR1_Chromosome 3745972 60 3745913 - NC_004347.1

Total number of rows: 2023636

Table truncated, full table size 228945 Kbytes.




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Supplementary file Size Download File type/resource
GPL16797_100318_Shew_one_MR1_JK_EXP_HX1.ndf.gz 77.5 Mb (ftp)(http) NDF

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