GEO DataSets

(Submitter supplied) Eukaryotic RNA molecules undergo multiple regulatory steps prior to being translated as proteins. Two features of post-transcriptional regulation are RNA secondary structure and RNA-binding protein (RBP) interactions with mRNAs. Here we reveal the global landscape of RBP-RNA interactions the bryophyte Physcomitrella patens undergoes as part of its response to the phytohormone abscisic acid (ABA). We show that P. more...

Organism:

Physcomitrium patens

Type:

Other

Platform:

GPL17793

24 Samples

Download data: BED, BED12

(Submitter supplied) Eukaryotic RNA molecules undergo multiple regulatory steps prior to being translated as proteins. Two features of post-transcriptional regulation are RNA secondary structure and RNA-binding protein (RBP) interactions with mRNAs. Here we reveal the global landscape of RBP-RNA interactions the bryophyte Physcomitrella patens undergoes as part of its response to the phytohormone abscisic acid (ABA). We show that P. more...

Organism:

Physcomitrium patens

Type:

Expression profiling by high throughput sequencing

Platform:

GPL17793

6 Samples

Download data: TXT

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Arabidopsis thaliana; Physcomitrium patens

Type:

Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing

5 related Platforms

29 Samples

Download data: GFF

(Submitter supplied) Cytosine methylation is commonly targeted to symmetrical CG sites, as well as to non-CGs, such as the symmetrical-CHG and asymmetric-CHH sites in plants (H= A, C or T). Thus far, depletion of CG methylation in plants was associated with ample transcriptional activation of transposons. Here, we profiled transcription in various context specific methylation mutants in the early-diverged plant, Physcomitrella patens. more...

Organism:

Physcomitrium patens

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL17793 GPL27916

20 Samples

Download data: TXT

(Submitter supplied) The moss Physcomitrella patens was employed to study abiotic stress responses in order to understand the effects of mild (30°C) and strong (37°C) continuous heat stresses from 1h to 24h at a transcriptomic level.

Organism:

Physcomitrium patens

Type:

Expression profiling by high throughput sequencing

Platform:

GPL17793

24 Samples

Download data: TXT

(Submitter supplied) Purpose: The plant hormone abscisic acid (ABA) coordinates responses leading to desiccation tolerance in all land plants. RNA-seq was employed to obtain differential expression data in response to ABA, dehydration and mannitol treatments in wild-type tissue. This was compared against the targeted gene knockout line PpanrKO. The ANR gene encodes a novel ABA regulator identified from ABA non-responsive (anr) mutant screens. more...

Organism:

Physcomitrium patens

Type:

Expression profiling by high throughput sequencing

Platform:

GPL17793

8 Samples

Download data: GFF, TXT

(Submitter supplied) To investigate the effects of dcl3,dcl4,mDCL,rdr2,rdr6,nrpd1b, and nrpd1c mutations upon small RNAs in Physcomitrella patens , small RNA-seq was performed.

Organism:

Physcomitrium patens

Type:

Non-coding RNA profiling by high throughput sequencing

Platform:

GPL17793

30 Samples

Download data: TXT