GSE117888[Accession] - GEO DataSets - NCBI

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Items: 19

Select item 2001178881.

Role of GR in protection of podocyte

(Submitter supplied) In order to understand the protection role of GR in hPC, we captured the GR binding sites and H3K27ac profiles with or without DEX treatment. As GR generally bound far away from TSS, we further generated chromatin interaction map with HiChIP to disect the mechanism of GR regulated transcriptome.

Organism:: Homo sapiens

Type:: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other

Platforms:: GPL20795 GPL16791
16 Samples

Download data: BEDGRAPH, BROADPEAK, GTF, HIC, NARROWPEAK

Series

Accession:: GSE117888

ID:: 200117888

PubMed Full text in PMC Similar studies Analyze with GEO2R SRA Run Selector

Select item 1000207952.

HiSeq X Ten (Homo sapiens)

Organism:: Homo sapiens

2093 Series
36075 Samples

Platform

Accession:: GPL20795

ID:: 100020795

Select item 1000167913.

Illumina HiSeq 2500 (Homo sapiens)

Organism:: Homo sapiens

12216 Series
349569 Samples

Platform

Accession:: GPL16791

ID:: 100016791

Select item 3050086504.

H3K27ac-DEX2-ChIP-seq

Organism:: Homo sapiens

Source name:: Podocyte

Platform:: GPL20795
Series:: GSE117888

Download data: BEDGRAPH, NARROWPEAK

Sample

Accession:: GSM5008650

ID:: 305008650

SRA Run Selector

Select item 3050086495.

H3K27ac-CTL2-ChIP-seq

Organism:: Homo sapiens

Source name:: Podocyte

Platform:: GPL20795
Series:: GSE117888

Download data: BEDGRAPH, NARROWPEAK

Sample

Accession:: GSM5008649

ID:: 305008649

SRA Run Selector

Select item 3050086476.

GR-ChIP-seq-rep2

Organism:: Homo sapiens

Source name:: Podocyte

Platform:: GPL20795
Series:: GSE117888

Download data: BEDGRAPH, NARROWPEAK

Sample

Accession:: GSM5008647

ID:: 305008647

SRA Run Selector

Select item 3050086487.

Organism:: Homo sapiens

Source name:: Podocyte

Platform:: GPL16791
Series:: GSE117888

Download data: BEDGRAPH, NARROWPEAK

Sample

Accession:: GSM5008648

ID:: 305008648

SRA Run Selector

Select item 3034447918.

H3K27ac-CTL2-HiChIP-seq

Organism:: Homo sapiens

Source name:: human podocyte

Platform:: GPL16791
Series:: GSE117888

Download data: HIC

Sample

Accession:: GSM3444791

ID:: 303444791

SRA Run Selector

Select item 3034447909.

H3K27ac-CTL1-HiChIP-seq

Organism:: Homo sapiens

Source name:: human podocyte

Platform:: GPL16791
Series:: GSE117888

Download data: HIC

Sample

Accession:: GSM3444790

ID:: 303444790

SRA Run Selector

Select item 30344478910.

H3K27ac-DEX2-HiChIP-seq

Organism:: Homo sapiens

Source name:: human podocyte

Platform:: GPL16791
Series:: GSE117888

Download data: HIC

Sample

Accession:: GSM3444789

ID:: 303444789

SRA Run Selector

Select item 30344478811.

H3K27ac-DEX1-HiChIP-seq

Organism:: Homo sapiens

Source name:: human podocyte

Platform:: GPL16791
Series:: GSE117888

Download data: HIC

Sample

Accession:: GSM3444788

ID:: 303444788

SRA Run Selector

Select item 30331450312.

Organism:: Homo sapiens

Source name:: human podocyte

Platform:: GPL16791
Series:: GSE117888

Download data: GTF

Sample

Accession:: GSM3314503

ID:: 303314503

SRA Run Selector

Select item 30331450213.

Organism:: Homo sapiens

Source name:: human podocyte

Platform:: GPL16791
Series:: GSE117888

Download data: GTF

Sample

Accession:: GSM3314502

ID:: 303314502

SRA Run Selector

Select item 30331450114.

Organism:: Homo sapiens

Source name:: human podocyte

Platform:: GPL16791
Series:: GSE117888

Download data: GTF

Sample

Accession:: GSM3314501

ID:: 303314501

SRA Run Selector

Select item 30331450015.

Organism:: Homo sapiens

Source name:: human podocyte

Platform:: GPL16791
Series:: GSE117888

Download data: GTF

Sample

Accession:: GSM3314500

ID:: 303314500

SRA Run Selector

Select item 30331449916.

Organism:: Homo sapiens

Source name:: human podocyte

Platform:: GPL16791
Series:: GSE117888

Sample

Accession:: GSM3314499

ID:: 303314499

SRA Run Selector

Select item 30331449817.

H3K27ac-DEX-ChIP-seq

Organism:: Homo sapiens

Source name:: human podocyte

Platform:: GPL16791
Series:: GSE117888

Download data: BEDGRAPH, BROADPEAK, NARROWPEAK

Sample

Accession:: GSM3314498

ID:: 303314498

SRA Run Selector

Select item 30331449718.

H3K27ac-CTL-ChIP-seq

Organism:: Homo sapiens

Source name:: human podocyte

Platform:: GPL16791
Series:: GSE117888

Download data: BEDGRAPH, BROADPEAK, NARROWPEAK

Sample

Accession:: GSM3314497

ID:: 303314497

SRA Run Selector

Select item 30331449619.

Organism:: Homo sapiens

Source name:: human podocyte

Platform:: GPL16791
Series:: GSE117888

Download data: BEDGRAPH, NARROWPEAK

Sample

Accession:: GSM3314496

ID:: 303314496

SRA Run Selector

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