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| Status |
Public on May 23, 2021 |
| Title |
Role of GR in protection of podocyte |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
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| Summary |
In order to understand the protection role of GR in hPC, we captured the GR binding sites and H3K27ac profiles with or without DEX treatment. As GR generally bound far away from TSS, we further generated chromatin interaction map with HiChIP to disect the mechanism of GR regulated transcriptome.
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| Overall design |
Cells with or without DEX treatment were subjected to ChIP-seq, RNA-seq and HiChIP
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| Contributor(s) |
Wang H, Duan A, Yang J |
| Citation(s) |
34083716 |
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| Submission date |
Jul 30, 2018 |
| Last update date |
Jun 15, 2021 |
| Contact name |
Jingping Yang |
| E-mail(s) |
[email protected]
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| Organization name |
Nanjing University
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| Department |
Medical School
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| Street address |
22 Hankou Road
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| City |
Nanjing |
| State/province |
Jiangsu |
| ZIP/Postal code |
210000 |
| Country |
China |
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| Platforms (2) |
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| Samples (16)
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| Relations |
| BioProject |
PRJNA483493 |
| SRA |
SRP155772 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE117888_RAW.tar |
3.8 Gb |
(http)(custom) |
TAR (of BEDGRAPH, BROADPEAK, GTF, HIC, NARROWPEAK) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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