GSE182317[Accession] - GEO DataSets

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Select item 2001823171.

Elevated enhancer-oncogene contacts and higher oncogene expression levels by recurrent CTCF inactivating mutations in acute T cell leukemia

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Homo sapiens

Type:: Genome binding/occupancy profiling by high throughput sequencing; Genome variation profiling by genome tiling array; Methylation profiling by array; Other

5 related Platforms
171 Samples

Download data: HIC, IDAT, NARROWPEAK, RDS, TXT

Series

Accession:: GSE182317

ID:: 200182317

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 1000211452.

Infinium MethylationEPIC

(Submitter supplied) See manufacturer's website

Organism:: Homo sapiens

1178 Series
1 Related Platform
80775 Samples

Download data: CSV

Platform

Accession:: GPL21145

ID:: 100021145

Select item 1000185733.

Illumina NextSeq 500 (Homo sapiens)

Organism:: Homo sapiens

12651 Series
344593 Samples

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Platform

Accession:: GPL18573

ID:: 100018573

Select item 1000097774.

Agilent-021850 SurePrint G3 Human CGH Microarray (Feature Number version)

(Submitter supplied) SurePrint G3 Human CGH Microarray 2x400K Arrays of this design have barcodes that begin with 16021850 or 2521850. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. more...

Organism:: Homo sapiens

37 Series
1 Related Platform
628 Samples

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Platform

Accession:: GPL9777

ID:: 100009777

Select item 1000040935.

Agilent-014698 Human Genome CGH Microarray 105A (G4412A)

(Submitter supplied) This kit provides two arrays per slide, each containing over 99,000 60-mer oligonucleotide probes. These probes, specifically optimized for copy-number measurement, span coding and non-coding genomic sequences with median spacing of 18.9 kb and 50.6 kb respectively. This microarray is designed for use with Agilent’s optimized assay protocols, enabling researchers to use nanogram levels of total genomic DNA without complexity reduction. more...

Organism:: Homo sapiens

21 Series
1 Related Platform
553 Samples

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Platform

Accession:: GPL4093

ID:: 100004093

Select item 1000028796.

Agilent-013282 Human Genome CGH Microarray 44B (Feature number version)

(Submitter supplied) Human Genome CGH Microarray 44B, high-resolution, high performance 60-mer oligonucleotide, allowing genome-wide survey and molecular profiling of DNA copy number changes on a single chip. It provides comprehensive genome-wide coverage with emphasis on the most commonly studied genomic regions and cancer-related genes. It consists of ~43,000 60-mer oligonucleotide probes, empirically validated in multiple model systems, spanning coding and noncoding sequences with average spatial resolution of 35kb. more...